What have we learned from the first 500 avian genomes?

GA Bravo, CJ Schmitt… - Annual Review of Ecology …, 2021 - annualreviews.org
The increased capacity of DNA sequencing has significantly advanced our understanding of
the phylogeny of birds and the proximate and ultimate mechanisms molding their genomic …

Convergent regulatory evolution and loss of flight in paleognathous birds

TB Sackton, P Grayson, A Cloutier, Z Hu, JS Liu… - Science, 2019 - science.org
A core question in evolutionary biology is whether convergent phenotypic evolution is driven
by convergent molecular changes in proteins or regulatory regions. We combined …

Genomic flatlining in the endangered island fox

JA Robinson, D Ortega-Del Vecchyo, Z Fan, BY Kim… - Current Biology, 2016 - cell.com
Genetic studies of rare and endangered species often focus on defining and preserving
genetically distinct populations, especially those having unique adaptations [1, 2]. Much less …

[HTML][HTML] Sleep, circadian dysrhythmia, obesity and diabetes

GR Sridhar, NSN Sanjana - World journal of diabetes, 2016 - ncbi.nlm.nih.gov
Synchrony of biological processes with environmental cues developed over millennia to
match growth, reproduction and senescence. This entails a complex interplay of genetic …

[LLIBRE][B] The sensory ecology of birds

GR Martin - 2017 - books.google.com
Birds are renowned for their exceptional vision and the way that this enables them to survive
and navigate the world in such a unique way. However, it is now recognised that avian …

Whole-genome analyses resolve the phylogeny of flightless birds (Palaeognathae) in the presence of an empirical anomaly zone

A Cloutier, TB Sackton, P Grayson, M Clamp… - Systematic …, 2019 - academic.oup.com
Palaeognathae represent one of the two basal lineages in modern birds, and comprise the
volant (flighted) tinamous and the flightless ratites. Resolving palaeognath phylogenetic …

Explosive ice age diversification of kiwi

JT Weir, O Haddrath, HA Robertson… - Proceedings of the …, 2016 - National Acad Sciences
Molecular dating largely overturned the paradigm that global cooling during recent
Pleistocene glacial cycles resulted in a burst of species diversification although some …

Evaluating the role of reference‐genome phylogenetic distance on evolutionary inference

A Prasad, ED Lorenzen… - Molecular ecology …, 2022 - Wiley Online Library
When a high‐quality genome assembly of a target species is unavailable, an option to avoid
the costly de novo assembly process is a map**‐based assembly. However, map** …

Resolving the avian tree of life from top to bottom: the promise and potential boundaries of the phylogenomic era

EL Braun, J Cracraft, P Houde - Avian genomics in ecology and evolution …, 2019 - Springer
Reconstructing relationships among extant birds (Neornithes) has been one of the most
difficult problems in phylogenetics, and, despite intensive effort, the avian tree of life remains …

Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp …

A Grealy, M Phillips, G Miller, MTP Gilbert… - Molecular phylogenetics …, 2017 - Elsevier
Palaeognaths, the sister group of all other living birds (neognaths), were once considered to
be vicariant relics from the breakup of the Gondwanan supercontinent. However, recent …