Best practices for single-cell analysis across modalities

L Heumos, AC Schaar, C Lance, A Litinetskaya… - Nature Reviews …, 2023 - nature.com
Recent advances in single-cell technologies have enabled high-throughput molecular
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …

[HTML][HTML] Integrating machine learning with human knowledge

C Deng, X Ji, C Rainey, J Zhang, W Lu - Iscience, 2020 - cell.com
Machine learning has been heavily researched and widely used in many disciplines.
However, achieving high accuracy requires a large amount of data that is sometimes …

Dictionary learning for integrative, multimodal and scalable single-cell analysis

Y Hao, T Stuart, MH Kowalski, S Choudhary… - Nature …, 2024 - nature.com
Map** single-cell sequencing profiles to comprehensive reference datasets provides a
powerful alternative to unsupervised analysis. However, most reference datasets are …

Integrated analysis of multimodal single-cell data

Y Hao, S Hao, E Andersen-Nissen, WM Mauck… - Cell, 2021 - cell.com
The simultaneous measurement of multiple modalities represents an exciting frontier for
single-cell genomics and necessitates computational methods that can define cellular states …

Linear discriminant analysis: A detailed tutorial

A Tharwat, T Gaber, A Ibrahim… - AI …, 2017 - content.iospress.com
Linear Discriminant Analysis (LDA) is a very common technique for dimensionality reduction
problems as a preprocessing step for machine learning and pattern classification …

Fault description based attribute transfer for zero-sample industrial fault diagnosis

L Feng, C Zhao - IEEE Transactions on Industrial Informatics, 2020 - ieeexplore.ieee.org
In this article, a challenging fault diagnosis task is studied, in which no samples of the target
faults are available for the model training. This scenario has hardly been studied in industrial …

Reduced basis methods for time-dependent problems

JS Hesthaven, C Pagliantini, G Rozza - Acta Numerica, 2022 - cambridge.org
Numerical simulation of parametrized differential equations is of crucial importance in the
study of real-world phenomena in applied science and engineering. Computational methods …

Principal component analysis-a tutorial

A Tharwat - International Journal of Applied Pattern …, 2016 - inderscienceonline.com
Dimensionality reduction is one of the preprocessing steps in many machine learning
applications and it is used to transform the features into a lower dimension space. Principal …

Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro

B Zhang, A Srivastava, E Mimitou, T Stuart… - Nature …, 2022 - nature.com
Technologies that profile chromatin modifications at single-cell resolution offer enormous
promise for functional genomic characterization, but the sparsity of the measurements and …

[HTML][HTML] Latent variable models in the era of industrial big data: Extension and beyond

X Kong, X Jiang, B Zhang, J Yuan, Z Ge - Annual Reviews in Control, 2022 - Elsevier
A rich supply of data and innovative algorithms have made data-driven modeling a popular
technique in modern industry. Among various data-driven methods, latent variable models …