Accurate and versatile 3D segmentation of plant tissues at cellular resolution

A Wolny, L Cerrone, A Vijayan, R Tofanelli, AV Barro… - Elife, 2020 - elifesciences.org
Quantitative analysis of plant and animal morphogenesis requires accurate segmentation of
individual cells in volumetric images of growing organs. In the last years, deep learning has …

A digital 3D reference atlas reveals cellular growth patterns sha** the Arabidopsis ovule

A Vijayan, R Tofanelli, S Strauss, L Cerrone, A Wolny… - Elife, 2021 - elifesciences.org
A fundamental question in biology is how morphogenesis integrates the multitude of
processes that act at different scales, ranging from the molecular control of gene expression …

Software Tools for 2D Cell Segmentation

P Liu, J Li, J Chang, P Hu, Y Sun, Y Jiang, F Zhang… - Cells, 2024 - mdpi.com
Cell segmentation is an important task in the field of image processing, widely used in the
life sciences and medical fields. Traditional methods are mainly based on pixel intensity and …

A digital quantitative and spatial reference atlas from microscopic 3D images of ovules in Arabidopsis thaliana

A Remadevi Vijayan - 2022 - mediatum.ub.tum.de
This study aims to understand the 3D cellular growth patterns associated with Arabidopsis
ovule morphogenesis using 3D digital image analysis. Machine learning-based image …

Quantitative analysis of cellular growth patterns in ovule morphogenesis and curvature in Arabidopsis thaliana

R Tofanelli - 2021 - mediatum.ub.tum.de
The ovule of Arabidopsis thaliana is a unique model system to study tissue morphogenesis
since the organ exhibits a curved shape (anatropy). The present study aims to generate a …