Pathogenesis of Helicobacter pylori infection

M Denic, E Touati, H De Reuse - Helicobacter, 2020 - Wiley Online Library
The original strategies developed by Helicobacter pylori to persistently colonise its host and
to deregulate its cellular functions make this bacterium an outstanding model to study host …

Phylogenetic classification and functional review of autotransporters

KR Clarke, L Hor, A Pilapitiya, J Luirink… - Frontiers in …, 2022 - frontiersin.org
Autotransporters are the core component of a molecular nano-machine that delivers cargo
proteins across the outer membrane of Gram-negative bacteria. Part of the type V secretion …

DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes

J Pfab, NM Phan, D Si - Proceedings of the National Academy of Sciences, 2021 - pnas.org
Information about macromolecular structure of protein complexes and related cellular and
molecular mechanisms can assist the search for vaccines and drug development processes …

Deep learning to predict protein backbone structure from high-resolution cryo-EM density maps

D Si, SA Moritz, J Pfab, J Hou, R Cao, L Wang, T Wu… - Scientific reports, 2020 - nature.com
Cryo-electron microscopy (cryo-EM) has become a leading technology for determining
protein structures. Recent advances in this field have allowed for atomic resolution …

Snapshots of the second-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM

S Li, MZ Palo, X Zhang, G Pintilie, K Zhang - Nature Communications, 2023 - nature.com
Group I introns are catalytic RNAs that coordinate two consecutive transesterification
reactions for self-splicing. To understand how the group I intron promotes catalysis and …

Topological crossing in the misfolded Tetrahymena ribozyme resolved by cryo-EM

S Li, MZ Palo, G Pintilie, X Zhang, Z Su… - Proceedings of the …, 2022 - pnas.org
The Tetrahymena group I intron has been a key system in the understanding of RNA folding
and misfolding. The molecule folds into a long-lived misfolded intermediate (M) in vitro …

Role of vacuolating cytotoxin A in Helicobacter pylori infection and its impact on gastric pathogenesis

S Ansari, Y Yamaoka - Expert Review of Anti-Infective Therapy, 2020 - Taylor & Francis
Introduction Helicobacter pylori causes, via the influence of several virulence factors,
persistent infection of the stomach, which leads to severe complications. Vacuolating …

Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM

X Zhang, S Li, G Pintilie, MZ Palo… - Nucleic Acids …, 2023 - academic.oup.com
Tetrahymena ribozyme is a group I intron, whose self-splicing is the result of two sequential
ester-transfer reactions. To understand how it facilitates catalysis in the first self-splicing …

Inhibition mechanisms of AcrF9, AcrF8, and AcrF6 against type IF CRISPR–Cas complex revealed by cryo-EM

K Zhang, S Wang, S Li, Y Zhu, GD Pintilie… - Proceedings of the …, 2020 - pnas.org
Prokaryotes and viruses have fought a long battle against each other. Prokaryotes use
CRISPR–Cas-mediated adaptive immunity, while conversely, viruses evolve multiple anti …

Pore-forming Esx proteins mediate toxin secretion by Mycobacterium tuberculosis

U Tak, T Dokland, M Niederweis - Nature Communications, 2021 - nature.com
Mycobacterium tuberculosis secretes the tuberculosis necrotizing toxin (TNT) to kill host
cells. Here, we show that the WXG100 proteins EsxE and EsxF are essential for TNT …