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The population genetics of pathogenic Escherichia coli
E Denamur, O Clermont, S Bonacorsi… - Nature Reviews …, 2021 - nature.com
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …
Genomics and pathotypes of the many faces of Escherichia coli
J Geurtsen, M de Been, E Weerdenburg… - FEMS microbiology …, 2022 - academic.oup.com
Escherichia coli is the most researched microbial organism in the world. Its varied impact on
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …
Global extraintestinal pathogenic Escherichia coli (ExPEC) lineages
AR Manges, HM Geum, A Guo, TJ Edens… - Clinical microbiology …, 2019 - journals.asm.org
SUMMARY Extraintestinal pathogenic Escherichia coli (ExPEC) strains are responsible for a
majority of human extraintestinal infections globally, resulting in enormous direct medical …
majority of human extraintestinal infections globally, resulting in enormous direct medical …
Variability of plasmid fitness effects contributes to plasmid persistence in bacterial communities
A Alonso-del Valle, R León-Sampedro… - Nature …, 2021 - nature.com
Plasmid persistence in bacterial populations is strongly influenced by the fitness effects
associated with plasmid carriage. However, plasmid fitness effects in wild-type bacterial …
associated with plasmid carriage. However, plasmid fitness effects in wild-type bacterial …
[HTML][HTML] Evolution of plasmid-mediated antibiotic resistance in the clinical context
A San Millan - Trends in microbiology, 2018 - cell.com
Antibiotic-resistant infections are an urgent problem in clinical settings because they sharply
increase mortality risk in critically ill patients. The horizontal spread of antibiotic resistance …
increase mortality risk in critically ill patients. The horizontal spread of antibiotic resistance …
[HTML][HTML] Whole genome sequencing options for bacterial strain ty** and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene …
Background Whole genome sequence (WGS)-based strain ty** finds increasing use in the
epidemiologic analysis of bacterial pathogens in both public health as well as more …
epidemiologic analysis of bacterial pathogens in both public health as well as more …
Why prokaryotes have pangenomes
The existence of large amounts of within-species genome content variability is puzzling.
Population genetics tells us that fitness effects of new variants—either deleterious, neutral or …
Population genetics tells us that fitness effects of new variants—either deleterious, neutral or …
Enterococcus faecium: from microbiological insights to practical recommendations for infection control and diagnostics
Early in its evolution, Enterococcus faecium acquired traits that allowed it to become a
successful nosocomial pathogen. E. faecium inherent tenacity to build resistance to …
successful nosocomial pathogen. E. faecium inherent tenacity to build resistance to …
Evolutionary pathways and trajectories in antibiotic resistance
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …
provided a wealth of information, but knowledge regarding “what happened” has precluded …
Ecological and evolutionary solutions to the plasmid paradox
The'plasmid paradox'arises because, although plasmids are common features of bacterial
genomes, theoretically they should not exist: rates of conjugation were believed insufficient …
genomes, theoretically they should not exist: rates of conjugation were believed insufficient …