The population genetics of pathogenic Escherichia coli

E Denamur, O Clermont, S Bonacorsi… - Nature Reviews …, 2021 - nature.com
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …

Genomics and pathotypes of the many faces of Escherichia coli

J Geurtsen, M de Been, E Weerdenburg… - FEMS microbiology …, 2022 - academic.oup.com
Escherichia coli is the most researched microbial organism in the world. Its varied impact on
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …

Global extraintestinal pathogenic Escherichia coli (ExPEC) lineages

AR Manges, HM Geum, A Guo, TJ Edens… - Clinical microbiology …, 2019 - journals.asm.org
SUMMARY Extraintestinal pathogenic Escherichia coli (ExPEC) strains are responsible for a
majority of human extraintestinal infections globally, resulting in enormous direct medical …

Variability of plasmid fitness effects contributes to plasmid persistence in bacterial communities

A Alonso-del Valle, R León-Sampedro… - Nature …, 2021 - nature.com
Plasmid persistence in bacterial populations is strongly influenced by the fitness effects
associated with plasmid carriage. However, plasmid fitness effects in wild-type bacterial …

[HTML][HTML] Evolution of plasmid-mediated antibiotic resistance in the clinical context

A San Millan - Trends in microbiology, 2018 - cell.com
Antibiotic-resistant infections are an urgent problem in clinical settings because they sharply
increase mortality risk in critically ill patients. The horizontal spread of antibiotic resistance …

[HTML][HTML] Whole genome sequencing options for bacterial strain ty** and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene …

AC Schürch, S Arredondo-Alonso, RJL Willems… - Clinical microbiology …, 2018 - Elsevier
Background Whole genome sequence (WGS)-based strain ty** finds increasing use in the
epidemiologic analysis of bacterial pathogens in both public health as well as more …

Why prokaryotes have pangenomes

JO McInerney, A McNally, MJ O'connell - Nature microbiology, 2017 - nature.com
The existence of large amounts of within-species genome content variability is puzzling.
Population genetics tells us that fitness effects of new variants—either deleterious, neutral or …

Enterococcus faecium: from microbiological insights to practical recommendations for infection control and diagnostics

X Zhou, RJL Willems, AW Friedrich… - … Resistance & Infection …, 2020 - Springer
Early in its evolution, Enterococcus faecium acquired traits that allowed it to become a
successful nosocomial pathogen. E. faecium inherent tenacity to build resistance to …

Evolutionary pathways and trajectories in antibiotic resistance

F Baquero, JL Martinez, V F. Lanza… - Clinical Microbiology …, 2021 - journals.asm.org
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …

Ecological and evolutionary solutions to the plasmid paradox

MA Brockhurst, E Harrison - Trends in Microbiology, 2022 - cell.com
The'plasmid paradox'arises because, although plasmids are common features of bacterial
genomes, theoretically they should not exist: rates of conjugation were believed insufficient …