Phenotype-aware prioritisation of rare Mendelian disease variants

C Kelly, A Szabo, N Pontikos, G Arno, PN Robinson… - Trends in Genetics, 2022 - cell.com
A molecular diagnosis from the analysis of sequencing data in rare Mendelian diseases has
a huge impact on the management of patients and their families. Numerous patient …

Phenotype‐driven approaches to enhance variant prioritization and diagnosis of rare disease

JOB Jacobsen, C Kelly, V Cipriani… - Human …, 2022 - Wiley Online Library
Rare disease diagnostics and disease gene discovery have been revolutionized by whole‐
exome and genome sequencing but identifying the causative variant (s) from the millions in …

[HTML][HTML] Genomic answers for children: Dynamic analyses of> 1000 pediatric rare disease genomes

ASA Cohen, EG Farrow, AT Abdelmoity, JT Alaimo… - Genetics in …, 2022 - Elsevier
Purpose This study aimed to provide comprehensive diagnostic and candidate analyses in a
pediatric rare disease cohort through the Genomic Answers for Kids program. Methods …

[HTML][HTML] Interpretable clinical genomics with a likelihood ratio paradigm

PN Robinson, V Ravanmehr, JOB Jacobsen… - The American Journal of …, 2020 - cell.com
Human Phenotype Ontology (HPO)-based analysis has become standard for genomic
diagnostics of rare diseases. Current algorithms use a variety of semantic and statistical …

Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases

X Yuan, J Wang, B Dai, Y Sun, K Zhang… - Briefings in …, 2022 - academic.oup.com
It's challenging work to identify disease-causing genes from the next-generation sequencing
(NGS) data of patients with Mendelian disorders. To improve this situation, researchers have …

Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases

M Zhao, JM Havrilla, L Fang, Y Chen… - NAR genomics and …, 2020 - academic.oup.com
Abstract Human Phenotype Ontology (HPO) terms are increasingly used in diagnostic
settings to aid in the characterization of patient phenotypes. The HPO annotation database …

[HTML][HTML] Artificial intelligence (AI)-assisted exome reanalysis greatly aids in the identification of new positive cases and reduces analysis time in a clinical diagnostic …

TD O'Brien, NE Campbell, AB Potter, JH Letaw… - Genetics in …, 2022 - Elsevier
Purpose Artificial intelligence (AI) and variant prioritization tools for genomic variant analysis
are being rapidly developed for use in clinical diagnostic testing. However, their clinical …

An improved phenotype-driven tool for rare mendelian variant prioritization: benchmarking exomiser on real patient whole-exome data

V Cipriani, N Pontikos, G Arno, PI Sergouniotis… - Genes, 2020 - mdpi.com
Next-generation sequencing has revolutionized rare disease diagnostics, but many patients
remain without a molecular diagnosis, particularly because many candidate variants usually …

Phen2Disease: a phenotype-driven model for disease and gene prioritization by bidirectional maximum matching semantic similarities

W Zhai, X Huang, N Shen, S Zhu - Briefings in Bioinformatics, 2023 - academic.oup.com
Abstract Human Phenotype Ontology (HPO)-based approaches have gained popularity in
recent times as a tool for genomic diagnostics of rare diseases. However, these approaches …

Personalised virtual gene panels reduce interpretation workload and maintain diagnostic rates of proband-only clinical exome sequencing for rare disorders

LP Molina-Ramírez, C Kyle, JM Ellingford… - Journal of Medical …, 2022 - jmg.bmj.com
Purpose The increased adoption of genomic strategies in the clinic makes it imperative for
diagnostic laboratories to improve the efficiency of variant interpretation. Clinical exome …