A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

Geometric deep learning on molecular representations

K Atz, F Grisoni, G Schneider - Nature Machine Intelligence, 2021 - nature.com
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …

Eqmotion: Equivariant multi-agent motion prediction with invariant interaction reasoning

C Xu, RT Tan, Y Tan, S Chen… - Proceedings of the …, 2023 - openaccess.thecvf.com
Learning to predict agent motions with relationship reasoning is important for many
applications. In motion prediction tasks, maintaining motion equivariance under Euclidean …

E (n) equivariant normalizing flows

V Garcia Satorras, E Hoogeboom… - Advances in …, 2021 - proceedings.neurips.cc
This paper introduces a generative model equivariant to Euclidean symmetries: E (n)
Equivariant Normalizing Flows (E-NFs). To construct E-NFs, we take the discriminative E (n) …

An efficient Lorentz equivariant graph neural network for jet tagging

S Gong, Q Meng, J Zhang, H Qu, C Li, S Qian… - Journal of High Energy …, 2022 - Springer
A bstract Deep learning methods have been increasingly adopted to study jets in particle
physics. Since symmetry-preserving behavior has been shown to be an important factor for …

Enhancing geometric representations for molecules with equivariant vector-scalar interactive message passing

Y Wang, T Wang, S Li, X He, M Li, Z Wang… - Nature …, 2024 - nature.com
Geometric deep learning has been revolutionizing the molecular modeling field. Despite the
state-of-the-art neural network models are approaching ab initio accuracy for molecular …

Data-driven quantum chemical property prediction leveraging 3D conformations with Uni-Mol+

S Lu, Z Gao, D He, L Zhang, G Ke - Nature communications, 2024 - nature.com
Quantum chemical (QC) property prediction is crucial for computational materials and drug
design, but relies on expensive electronic structure calculations like density functional theory …

SE (3) equivariant graph neural networks with complete local frames

W Du, H Zhang, Y Du, Q Meng… - International …, 2022 - proceedings.mlr.press
Abstract Group equivariance (eg SE (3) equivariance) is a critical physical symmetry in
science, from classical and quantum physics to computational biology. It enables robust and …

Energy-motivated equivariant pretraining for 3d molecular graphs

R Jiao, J Han, W Huang, Y Rong, Y Liu - Proceedings of the AAAI …, 2023 - ojs.aaai.org
Pretraining molecular representation models without labels is fundamental to various
applications. Conventional methods mainly process 2D molecular graphs and focus solely …

Unsupervised learning of group invariant and equivariant representations

R Winter, M Bertolini, T Le, F Noé… - Advances in Neural …, 2022 - proceedings.neurips.cc
Equivariant neural networks, whose hidden features transform according to representations
of a group $ G $ acting on the data, exhibit training efficiency and an improved …