Major revisions in pancrustacean phylogeny and evidence of sensitivity to taxon sampling
The clade Pancrustacea, comprising crustaceans and hexapods, is the most diverse group
of animals on earth, containing over 80% of animal species and half of animal biomass. It …
of animals on earth, containing over 80% of animal species and half of animal biomass. It …
OrthoFinder: phylogenetic orthology inference for comparative genomics
Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder's
high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted …
high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted …
[PDF][PDF] OrthoFinder2: fast and accurate phylogenomic orthology analysis from gene sequences
Ortholog inference has fundamental importance across the biological sciences,
underpinning phylogenetics, comparative genomics and prediction of gene function. We …
underpinning phylogenetics, comparative genomics and prediction of gene function. We …
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more
OMA is an established resource to elucidate evolutionary relationships among genes from
currently 2326 genomes covering all domains of life. OMA provides pairwise and groupwise …
currently 2326 genomes covering all domains of life. OMA provides pairwise and groupwise …
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
Identifying homology relationships between sequences is fundamental to biological
research. Here we provide a novel orthogroup inference algorithm called OrthoFinder that …
research. Here we provide a novel orthogroup inference algorithm called OrthoFinder that …
Ensembl comparative genomics resources
J Herrero, M Muffato, K Beal, S Fitzgerald, L Gordon… - Database, 2016 - academic.oup.com
Evolution provides the unifying framework with which to understand biology. The coherent
investigation of genic and genomic data often requires comparative genomics analyses …
investigation of genic and genomic data often requires comparative genomics analyses …
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis
ABSTRACT GET_HOMOLOGUES is an open-source software package that builds on
popular orthology-calling approaches making highly customizable and detailed pangenome …
popular orthology-calling approaches making highly customizable and detailed pangenome …
Genenames. org: the HGNC resources in 2015
KA Gray, B Yates, RL Seal, MW Wright… - Nucleic acids …, 2015 - academic.oup.com
Abstract The HUGO Gene Nomenclature Committee (HGNC) based at the European
Bioinformatics Institute (EMBL-EBI) assigns unique symbols and names to human genes. To …
Bioinformatics Institute (EMBL-EBI) assigns unique symbols and names to human genes. To …
Universal allosteric mechanism for Gα activation by GPCRs
G protein-coupled receptors (GPCRs) allosterically activate heterotrimeric G proteins and
trigger GDP release. Given that there are∼ 800 human GPCRs and 16 different Gα genes …
trigger GDP release. Given that there are∼ 800 human GPCRs and 16 different Gα genes …
eggNOG v4. 0: nested orthology inference across 3686 organisms
With the increasing availability of various 'omics data, high-quality orthology assignment is
crucial for evolutionary and functional genomics studies. We here present the fourth version …
crucial for evolutionary and functional genomics studies. We here present the fourth version …