Rice functional genomics: decades' efforts and roads ahead

R Chen, Y Deng, Y Ding, J Guo, J Qiu, B Wang… - Science China Life …, 2022 - Springer
Rice (Oryza sativa L.) is one of the most important crops in the world. Since the completion of
rice reference genome sequences, tremendous progress has been achieved in …

Means, mechanisms and consequences of adenine methylation in DNA

K Boulias, EL Greer - Nature Reviews Genetics, 2022 - nature.com
Abstract N 6-methyl-2′-deoxyadenosine (6mA or m6dA) has been reported in the DNA of
prokaryotes and eukaryotes ranging from unicellular protozoa and algae to multicellular …

Dynamics of DNA methylation and its functions in plant growth and development

S Kumar, T Mohapatra - Frontiers in Plant Science, 2021 - frontiersin.org
Epigenetic modifications in DNA bases and histone proteins play important roles in the
regulation of gene expression and genome stability. Chemical modification of DNA base …

DNA hypomethylation in tetraploid rice potentiates stress-responsive gene expression for salt tolerance

L Wang, S Cao, P Wang, K Lu, Q Song, FJ Zhao… - Proceedings of the …, 2021 - pnas.org
Polyploidy is a prominent feature for genome evolution in many animals and all flowering
plants. Plant polyploids often show enhanced fitness in diverse and extreme environments …

[HTML][HTML] Epigenetic modifications of mRNA and DNA in plants

Z Liang, A Riaz, S Chachar, Y Ding, H Du, X Gu - Molecular Plant, 2020 - cell.com
Advances in the detection and map** of messenger RNA (mRNA) N 6-methyladenosine
(m 6 A) and 5-methylcytosine (m 5 C), and DNA N 6-methyldeoxyadenosine (6mA) …

Identification and analysis of adenine N6-methylation sites in the rice genome

C Zhou, C Wang, H Liu, Q Zhou, Q Liu, Y Guo, T Peng… - Nature plants, 2018 - nature.com
Abstract DNA N 6-methyladenine (6mA) is a non-canonical DNA modification that is present
at low levels in different eukaryotes,,,,,,–, but its prevalence and genomic function in higher …

N6-methyladenine DNA methylation in Japonica and Indica rice genomes and its association with gene expression, plant development, and stress responses

Q Zhang, Z Liang, X Cui, C Ji, Y Li, P Zhang, J Liu… - Molecular Plant, 2018 - cell.com
Abstract N 6-Methyladenine (6mA) DNA methylation has recently been implicated as a
potential new epigenetic marker in eukaryotes, including the dicot model Arabidopsis …

Rice functional genomics research: past decade and future

Y Li, J **ao, L Chen, X Huang, Z Cheng, B Han… - Molecular plant, 2018 - cell.com
Rice (Oryza sativa) is a major staple food crop for more than 3.5 billion people worldwide.
Understanding the regulatory mechanisms of complex agronomic traits in rice is critical for …

Twenty years of rice genomics research: From sequencing and functional genomics to quantitative genomics

C Wang, B Han - Molecular Plant, 2022 - cell.com
Since the completion of the rice genome sequencing project in 2005, we have entered the
era of rice genomics, which is still in its ascendancy. Rice genomics studies can be …

The transcription factor MdBPC2 alters apple growth and promotes dwarfing by regulating auxin biosynthesis

H Zhao, S Wan, Y Huang, X Li, T Jiao, Z Zhang… - The Plant …, 2024 - academic.oup.com
Auxin plays important roles throughout plant growth and development. However, the
mechanisms of auxin regulation of plant structure are poorly understood. In this study, we …