Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W **, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

[HTML][HTML] A perspective on conventional high-temperature superconductors at high pressure: Methods and materials

JA Flores-Livas, L Boeri, A Sanna, G Profeta, R Arita… - Physics Reports, 2020 - Elsevier
Two hydrogen-rich materials, H 3 S and LaH 10, synthesized at megabar pressures, have
revolutionized the field of condensed matter physics providing the first glimpse to the …

Equibind: Geometric deep learning for drug binding structure prediction

H Stärk, O Ganea, L Pattanaik… - International …, 2022 - proceedings.mlr.press
Predicting how a drug-like molecule binds to a specific protein target is a core problem in
drug discovery. An extremely fast computational binding method would enable key …

NPClassifier: a deep neural network-based structural classification tool for natural products

HW Kim, M Wang, CA Leber, LF Nothias… - Journal of Natural …, 2021 - ACS Publications
Computational approaches such as genome and metabolome mining are becoming
essential to natural products (NPs) research. Consequently, a need exists for an automated …

Deep learning for computational chemistry

GB Goh, NO Hodas, A Vishnu - Journal of computational …, 2017 - Wiley Online Library
The rise and fall of artificial neural networks is well documented in the scientific literature of
both computer science and computational chemistry. Yet almost two decades later, we are …

Constrained Bayesian optimization for automatic chemical design using variational autoencoders

RR Griffiths, JM Hernández-Lobato - Chemical science, 2020 - pubs.rsc.org
Automatic Chemical Design is a framework for generating novel molecules with optimized
properties. The original scheme, featuring Bayesian optimization over the latent space of a …

Recent advances in spirocyclization of indole derivatives

J Bariwal, LG Voskressensky… - Chemical Society …, 2018 - pubs.rsc.org
Spiroindolines and spiroindoles are an important class of spirocyclic compounds present in
a wide range of pharmaceuticals and biologically important natural alkaloids. Various …

The chemical space project

JL Reymond - Accounts of chemical research, 2015 - ACS Publications
Conspectus One of the simplest questions that can be asked about molecular diversity is
how many organic molecules are possible in total? To answer this question, my research …

Enumeration of 166 billion organic small molecules in the chemical universe database GDB-17

L Ruddigkeit, R Van Deursen, LC Blum… - Journal of chemical …, 2012 - ACS Publications
Drug molecules consist of a few tens of atoms connected by covalent bonds. How many
such molecules are possible in total and what is their structure? This question is of pressing …

Deep learning model for efficient protein–ligand docking with implicit side-chain flexibility

MR Masters, AH Mahmoud, Y Wei… - Journal of Chemical …, 2023 - ACS Publications
Protein–ligand docking is an essential tool in structure-based drug design with applications
ranging from virtual high-throughput screening to pose prediction for lead optimization. Most …