The human proteoform project: defining the human proteome

LM Smith, JN Agar, J Chamot-Rooke, PO Danis… - Science …, 2021 - science.org
Proteins are the primary effectors of function in biology, and thus, complete knowledge of
their structure and properties is fundamental to deciphering function in basic and …

Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments

L Gatto, R Aebersold, J Cox, V Demichev, J Derks… - Nature …, 2023 - nature.com
Analyzing proteins from single cells by tandem mass spectrometry (MS) has recently
become technically feasible. While such analysis has the potential to accurately quantify …

Single-cell proteomics: progress and prospects

RT Kelly - Molecular & Cellular Proteomics, 2020 - ASBMB
MS-based proteome profiling has become increasingly comprehensive and quantitative, yet
a persistent shortcoming has been the relatively large samples required to achieve an in …

Streamlined single-cell proteomics by an integrated microfluidic chip and data-independent acquisition mass spectrometry

ST Gebreyesus, AA Siyal, RB Kitata, ESW Chen… - Nature …, 2022 - nature.com
Single-cell proteomics can reveal cellular phenotypic heterogeneity and cell-specific
functional networks underlying biological processes. Here, we present a streamlined …

Recent advances in microfluidic technology for bioanalysis and diagnostics

SF Berlanda, M Breitfeld, CL Dietsche… - Analytical …, 2020 - ACS Publications
Microfluidics has become a mature technology, providing an excellent toolbox for the
handling and manipulation of fluid samples, suspended cells, and particles. About 30 years …

An introduction to mass spectrometry-based proteomics

SR Shuken - Journal of Proteome Research, 2023 - ACS Publications
Mass spectrometry is unmatched in its versatility for studying practically any aspect of the
proteome. Because the foundations of mass spectrometry-based proteomics are complex …

Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications

C Ctortecka, NM Clark, BW Boyle, A Seth… - Nature …, 2024 - nature.com
The recent technological and computational advances in mass spectrometry-based single-
cell proteomics have pushed the boundaries of sensitivity and throughput. However …

Ultrasensitive single-cell proteomics workflow identifies> 1000 protein groups per mammalian cell

Y Cong, K Motamedchaboki, SA Misal, Y Liang… - Chemical …, 2021 - pubs.rsc.org
We report on the combination of nanodroplet sample preparation, ultra-low-flow nanoLC,
high-field asymmetric ion mobility spectrometry (FAIMS), and the latest-generation Orbitrap …

High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip

J Woo, SM Williams, LM Markillie, S Feng… - Nature …, 2021 - nature.com
Global quantification of protein abundances in single cells could provide direct information
on cellular phenotypes and complement transcriptomics measurements. However, single …

Single-cell proteomics

LF Vistain, S Tay - Trends in biochemical sciences, 2021 - cell.com
The inability to make broad, minimally biased measurements of a cell's proteome stands as
a major bottleneck for understanding how gene expression translates into cellular …