The agreementmakerlight ontology matching system
AgreementMaker is one of the leading ontology matching systems, thanks to its combination
of a flexible and extensible framework with a comprehensive user interface. In many …
of a flexible and extensible framework with a comprehensive user interface. In many …
Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?
The biomedical literature can be seen as a large integrated, but unstructured data
repository. Extracting facts from literature and making them accessible is approached from …
repository. Extracting facts from literature and making them accessible is approached from …
Measuring semantic similarity between Gene Ontology terms
Many bioinformatics applications would benefit from comparing proteins based on their
biological role rather than their sequence. This paper adds two new contributions. First, a …
biological role rather than their sequence. This paper adds two new contributions. First, a …
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters
Background Ontological concepts are useful for many different biomedical tasks. Concepts
are difficult to recognize in text due to a disconnect between what is captured in an ontology …
are difficult to recognize in text due to a disconnect between what is captured in an ontology …
Computational approaches for protein function prediction: A survey
Proteins are the most essential and versatile macromolecules of life, and the knowledge of
their functions is a crucial link in the development of new drugs, better crops, and even the …
their functions is a crucial link in the development of new drugs, better crops, and even the …
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors
Many bioinformatics applications would benefit from comparing proteins based on their
biological role rather than their sequence. In most biological databases, proteins are already …
biological role rather than their sequence. In most biological databases, proteins are already …
AgBase: a unified resource for functional analysis in agriculture
Abstract Analysis of functional genomics (transcriptomics and proteomics) datasets is
hindered in agricultural species because agricultural genome sequences have relatively …
hindered in agricultural species because agricultural genome sequences have relatively …
Combining heterogeneous data sources for accurate functional annotation of proteins
Combining heterogeneous sources of data is essential for accurate prediction of protein
function. The task is complicated by the fact that while sequence-based features can be …
function. The task is complicated by the fact that while sequence-based features can be …
Computational polypharmacology with text mining and ontologies
C Plake, M Schroeder - Current pharmaceutical biotechnology, 2011 - ingentaconnect.com
Huge volumes of data, produced by microarrays and next-generation sequencing, are now
at the fingertips of scientists and allow to expand the scope beyond conventional drug …
at the fingertips of scientists and allow to expand the scope beyond conventional drug …
Evaluating the effect of annotation size on measures of semantic similarity
Background Ontologies are widely used as metadata in biological and biomedical datasets.
Measures of semantic similarity utilize ontologies to determine how similar two entities …
Measures of semantic similarity utilize ontologies to determine how similar two entities …