Recent advances in the plant epitranscriptome

L Shen, J Ma, P Li, Y Wu, H Yu - Genome Biology, 2023‏ - Springer
Chemical modifications of RNAs, known as the epitranscriptome, are emerging as
widespread regulatory mechanisms underlying gene regulation. The field of …

N6‐methyladenosine regulatory machinery in plants: composition, function and evolution

H Yue, X Nie, Z Yan, S Weining - Plant Biotechnology Journal, 2019‏ - Wiley Online Library
Summary N6‐methyladenosine (m6A) RNA methylation, one of the most pivotal internal
modifications of RNA, is a conserved post‐transcriptional mechanism to enrich and regulate …

Quantitative profiling of N6-methyladenosine at single-base resolution in stem-differentiating xylem of Populus trichocarpa using Nanopore direct RNA sequencing

Y Gao, X Liu, B Wu, H Wang, F **, MV Kohnen… - Genome biology, 2021‏ - Springer
There are no comprehensive methods to identify N 6-methyladenosine (m 6 A) at single-
base resolution for every single transcript, which is necessary for the estimation of m 6 A …

Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications

Z Song, D Huang, B Song, K Chen, Y Song… - Nature …, 2021‏ - nature.com
Recent studies suggest that epi-transcriptome regulation via post-transcriptional RNA
modifications is vital for all RNA types. Precise identification of RNA modification sites is …

MdMTA‐mediated m6A modification enhances drought tolerance by promoting mRNA stability and translation efficiency of genes involved in lignin deposition and …

N Hou, C Li, J He, Y Liu, S Yu, M Malnoy… - New …, 2022‏ - Wiley Online Library
Although the N6‐methyladenosine (m6A) modification is the most prevalent RNA
modification in eukaryotes, the global m6A modification landscape and its molecular …

m6A‐mediated regulation of crop development and stress responses

L Zhou, G Gao, R Tang, W Wang… - Plant Biotechnology …, 2022‏ - Wiley Online Library
Dynamic chemical modifications in eukaryotic messenger RNAs (mRNAs) constitute an
essential layer of gene regulation, among which N6‐methyladenosine (m6A) was unveiled …

Plant pangenomics: approaches, applications and advancements

MF Danilevicz, CGT Fernandez, JI Marsh… - Current opinion in plant …, 2020‏ - Elsevier
Highlights•Pan-genomes represent the complex genomic diversity found in plant
species.•Novel approaches are under development to enable more complex pan-genome …

Evolution of the RNA N6-Methyladenosine Methylome Mediated by Genomic Duplication

Z Miao, T Zhang, Y Qi, J Song, Z Han, C Ma - Plant Physiology, 2020‏ - academic.oup.com
Abstract RNA N 6-methyladenosine (m6A) modification is the most abundant form of RNA
epigenetic modification in eukaryotes. Given that m6A evolution is associated with the …

m6A-TCPred: a web server to predict tissue-conserved human m6A sites using machine learning approach

G Tu, X Wang, R **a, B Song - BMC bioinformatics, 2024‏ - Springer
Abstract Background N6-methyladenosine (m6A) is the most prevalent post-transcriptional
modification in eukaryotic cells that plays a crucial role in regulating various biological …

m6A-TSHub: Unveiling the Context-Specific m6A Methylation and m6A-Affecting Mutations in 23 Human Tissues

B Song, D Huang, Y Zhang, Z Wei, J Su… - Genomics …, 2023‏ - academic.oup.com
As the most pervasive epigenetic marker present on mRNAs and long non-coding RNAs
(lncRNAs), N 6-methyladenosine (m6A) RNA methylation has been shown to participate in …