Mechanistic modeling of SARS‐CoV‐2 and other infectious diseases and the effects of therapeutics

AS Perelson, R Ke - Clinical Pharmacology & Therapeutics, 2021 - Wiley Online Library
Modern viral kinetic modeling and its application to therapeutics is a field that attracted the
attention of the medical, pharmaceutical, and modeling communities during the early days of …

The social life of viruses

R Sanjuán - Annual review of virology, 2021 - annualreviews.org
Despite their simplicity, viruses exhibit certain types of social interactions. Situations in which
a given virus achieves higher fitness in combination with other members of the viral …

Rapid transmission and tight bottlenecks constrain the evolution of highly transmissible SARS-CoV-2 variants

EE Bendall, AP Callear, A Getz, K Goforth… - Nature …, 2023 - nature.com
Transmission bottlenecks limit the spread of novel mutations and reduce the efficiency of
selection along a transmission chain. While increased force of infection, receptor binding, or …

Incomplete influenza A virus genomes occur frequently but are readily complemented during localized viral spread

NT Jacobs, NO Onuoha, A Antia, J Steel, R Antia… - Nature …, 2019 - nature.com
Segmentation of viral genomes into multiple RNAs creates the potential for replication of
incomplete viral genomes (IVGs). Here we use a single-cell approach to quantify influenza A …

Superinfection exclusion creates spatially distinct influenza virus populations

A Sims, LB Tornaletti, S Jasim, C Pirillo, R Devlin… - PLoS …, 2023 - journals.plos.org
Interactions between viruses during coinfections can influence viral fitness and population
diversity, as seen in the generation of reassortant pandemic influenza A virus (IAV) strains …

Influenza A virus reassortment in mammals gives rise to genetically distinct within-host subpopulations

K Ganti, A Bagga, S Carnaccini, LM Ferreri… - Nature …, 2022 - nature.com
Influenza A virus (IAV) genetic exchange through reassortment has the potential to
accelerate viral evolution and has played a critical role in the generation of multiple …

A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract

C Quirouette, NP Younis, MB Reddy… - PLoS computational …, 2020 - journals.plos.org
Within the human respiratory tract (HRT), virus diffuses through the periciliary fluid (PCF)
bathing the epithelium. But virus also undergoes advection: as the mucus layer sitting atop …

Kinetics of SARS-CoV-2 infection in the human upper and lower respiratory tracts and their relationship with infectiousness

R Ke, C Zitzmann, RM Ribeiro, AS Perelson - MedRxiv, 2020 - medrxiv.org
SARS-CoV-2 is a human pathogen that causes infection in both the upper respiratory tract
(URT) and the lower respiratory tract (LRT). The viral kinetics of SARS-CoV-2 infection and …

Recombinant vector vaccine evolution

JJ Bull, SL Nuismer, R Antia - PLoS computational biology, 2019 - journals.plos.org
Replicating recombinant vector vaccines consist of a fully competent viral vector backbone
engineered to express an antigen from a foreign transgene. From the perspective of viral …

The evolution of cheating in viruses

A Leeks, SA West, M Ghoul - Nature Communications, 2021 - nature.com
The success of many viruses depends upon cooperative interactions between viral
genomes. However, whenever cooperation occurs, there is the potential for 'cheats' to …