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Mechanistic modeling of SARS‐CoV‐2 and other infectious diseases and the effects of therapeutics
Modern viral kinetic modeling and its application to therapeutics is a field that attracted the
attention of the medical, pharmaceutical, and modeling communities during the early days of …
attention of the medical, pharmaceutical, and modeling communities during the early days of …
The social life of viruses
R Sanjuán - Annual review of virology, 2021 - annualreviews.org
Despite their simplicity, viruses exhibit certain types of social interactions. Situations in which
a given virus achieves higher fitness in combination with other members of the viral …
a given virus achieves higher fitness in combination with other members of the viral …
Rapid transmission and tight bottlenecks constrain the evolution of highly transmissible SARS-CoV-2 variants
EE Bendall, AP Callear, A Getz, K Goforth… - Nature …, 2023 - nature.com
Transmission bottlenecks limit the spread of novel mutations and reduce the efficiency of
selection along a transmission chain. While increased force of infection, receptor binding, or …
selection along a transmission chain. While increased force of infection, receptor binding, or …
Incomplete influenza A virus genomes occur frequently but are readily complemented during localized viral spread
NT Jacobs, NO Onuoha, A Antia, J Steel, R Antia… - Nature …, 2019 - nature.com
Segmentation of viral genomes into multiple RNAs creates the potential for replication of
incomplete viral genomes (IVGs). Here we use a single-cell approach to quantify influenza A …
incomplete viral genomes (IVGs). Here we use a single-cell approach to quantify influenza A …
Superinfection exclusion creates spatially distinct influenza virus populations
Interactions between viruses during coinfections can influence viral fitness and population
diversity, as seen in the generation of reassortant pandemic influenza A virus (IAV) strains …
diversity, as seen in the generation of reassortant pandemic influenza A virus (IAV) strains …
Influenza A virus reassortment in mammals gives rise to genetically distinct within-host subpopulations
Influenza A virus (IAV) genetic exchange through reassortment has the potential to
accelerate viral evolution and has played a critical role in the generation of multiple …
accelerate viral evolution and has played a critical role in the generation of multiple …
A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract
C Quirouette, NP Younis, MB Reddy… - PLoS computational …, 2020 - journals.plos.org
Within the human respiratory tract (HRT), virus diffuses through the periciliary fluid (PCF)
bathing the epithelium. But virus also undergoes advection: as the mucus layer sitting atop …
bathing the epithelium. But virus also undergoes advection: as the mucus layer sitting atop …
Kinetics of SARS-CoV-2 infection in the human upper and lower respiratory tracts and their relationship with infectiousness
SARS-CoV-2 is a human pathogen that causes infection in both the upper respiratory tract
(URT) and the lower respiratory tract (LRT). The viral kinetics of SARS-CoV-2 infection and …
(URT) and the lower respiratory tract (LRT). The viral kinetics of SARS-CoV-2 infection and …
Recombinant vector vaccine evolution
Replicating recombinant vector vaccines consist of a fully competent viral vector backbone
engineered to express an antigen from a foreign transgene. From the perspective of viral …
engineered to express an antigen from a foreign transgene. From the perspective of viral …
The evolution of cheating in viruses
The success of many viruses depends upon cooperative interactions between viral
genomes. However, whenever cooperation occurs, there is the potential for 'cheats' to …
genomes. However, whenever cooperation occurs, there is the potential for 'cheats' to …