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The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally
The discovery of chemosynthetic ecosystems at deep-sea hydrothermal vents in 1977
changed our view of biology. Chemosynthetic bacteria and archaea form the foundation of …
changed our view of biology. Chemosynthetic bacteria and archaea form the foundation of …
Within-host evolution of bacterial pathogens
Whole-genome sequencing has opened the way for investigating the dynamics and
genomic evolution of bacterial pathogens during the colonization and infection of humans …
genomic evolution of bacterial pathogens during the colonization and infection of humans …
High taxonomic variability despite stable functional structure across microbial communities
Understanding the processes that are driving variation of natural microbial communities
across space or time is a major challenge for ecologists. Environmental conditions strongly …
across space or time is a major challenge for ecologists. Environmental conditions strongly …
Cospeciation of gut microbiota with hominids
The evolutionary origins of the bacterial lineages that populate the human gut are unknown.
Here we show that multiple lineages of the predominant bacterial taxa in the gut arose via …
Here we show that multiple lineages of the predominant bacterial taxa in the gut arose via …
Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira
The description of comammox Nitrospira spp., performing complete ammonia-to-nitrate
oxidation, and their co-occurrence with canonical β-proteobacterial ammonia oxidizing …
oxidation, and their co-occurrence with canonical β-proteobacterial ammonia oxidizing …
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
New microbial genomes are constantly being sequenced, and it is crucial to accurately
determine their taxonomic identities and evolutionary relationships. Here we report …
determine their taxonomic identities and evolutionary relationships. Here we report …
Tracing the enterococci from Paleozoic origins to the hospital
We examined the evolutionary history of leading multidrug resistant hospital pathogens, the
enterococci, to their origin hundreds of millions of years ago. Our goal was to understand …
enterococci, to their origin hundreds of millions of years ago. Our goal was to understand …
Ecology drives a global network of gene exchange connecting the human microbiome
Horizontal gene transfer (HGT), the acquisition of genetic material from non-parental
lineages, is known to be important in bacterial evolution,. In particular, HGT provides rapid …
lineages, is known to be important in bacterial evolution,. In particular, HGT provides rapid …
Persistent infection and long-term carriage of typhoidal and nontyphoidal salmonellae
The ability of pathogenic bacteria to affect higher organisms and cause disease is one of the
most dramatic properties of microorganisms. Some pathogens can establish transient …
most dramatic properties of microorganisms. Some pathogens can establish transient …
Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
Because a natural entity “species” cannot be recognized as a group of strains that is
genetically well separated from its phylogenetic neighbors, a pragmatic approach was taken …
genetically well separated from its phylogenetic neighbors, a pragmatic approach was taken …