Multiscale QM/MM modelling of catalytic systems with ChemShell

Y Lu, K Sen, C Yong, DSD Gunn, JA Purton… - Physical Chemistry …, 2023 - pubs.rsc.org
Hybrid quantum mechanical/molecular mechanical (QM/MM) methods are a powerful
computational tool for the investigation of all forms of catalysis, as they allow for an accurate …

Functional materials discovery using energy–structure–function maps

A Pulido, L Chen, T Kaczorowski, D Holden, MA Little… - Nature, 2017 - nature.com
Molecular crystals cannot be designed in the same manner as macroscopic objects,
because they do not assemble according to simple, intuitive rules. Their structures result …

Understanding gas capacity, guest selectivity, and diffusion in porous liquids

RL Greenaway, D Holden, EGB Eden… - Chemical …, 2017 - pubs.rsc.org
Porous liquids are a new class of material that could have applications in areas such as gas
separation and homogeneous catalysis. Here we use a combination of measurement …

[BUCH][B] Molecular simulations: fundamentals and practice

S Alavi - 2020 - books.google.com
Provides hands-on knowledge enabling students of and researchers in chemistry, biology,
and engineering to perform molecular simulations This book introduces the fundamentals of …

Open-source, python-based redevelopment of the ChemShell multiscale QM/MM environment

Y Lu, MR Farrow, P Fayon, AJ Logsdail… - Journal of chemical …, 2018 - ACS Publications
ChemShell is a scriptable computational chemistry environment with an emphasis on
multiscale simulation of complex systems using combined quantum mechanical and …

Influence of solvent selection on the crystallizability and polymorphic selectivity associated with the formation of the “disappeared” form I polymorph of ritonavir

C Wang, CY Ma, RS Hong, TD Turner… - Molecular …, 2024 - ACS Publications
The comparative crystallizability and polymorphic selectivity of ritonavir, a novel protease
inhibitor for the treatment of acquired immune-deficiency syndrome, as a function of solvent …

pywindow: Automated Structural Analysis of Molecular Pores

M Miklitz, KE Jelfs - Journal of Chemical Information and …, 2018 - ACS Publications
Structural analysis of molecular pores can yield important information on their behavior in
solution and in the solid state. We developed pywindow, a python package that enables the …

From GROMACS to LAMMPS: GRO2LAM: A converter for molecular dynamics software

H Chávez Thielemann, A Cardellini, M Fasano… - Journal of molecular …, 2019 - Springer
Atomistic simulations have progressively attracted attention in the study of physical-chemical
properties of innovative nanomaterials. GROMACS and LAMMPS are currently the most …

Computational screening of porous organic molecules for xenon/krypton separation

M Miklitz, S Jiang, R Clowes, ME Briggs… - The Journal of …, 2017 - ACS Publications
We performed a computational screening of previously reported porous molecular materials,
including porous organic cages, cucurbiturils, cyclodextrins, and cryptophanes, for Xe/Kr …

Comparative study of oxygen diffusion in polyethylene terephthalate and polyethylene furanoate using molecular modeling: computational insights into the …

JC Lightfoot, A Buchard, B Castro-Dominguez… - …, 2021 - ACS Publications
Bio-derived polyethylene furanoate (PEF) has recently gained attention as a sustainable
alternative to polyethylene terephthalate (PET), amidst environmental concerns over fossil …