[HTML][HTML] Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in BLUPF90

D Lourenco, A Legarra, S Tsuruta, Y Masuda, I Aguilar… - Genes, 2020 - mdpi.com
Single-step genomic evaluation became a standard procedure in livestock breeding, and
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …

[HTML][HTML] Invited review: Advances and applications of random regression models: From quantitative genetics to genomics

HR Oliveira, LF Brito, DAL Lourenco, FF Silva… - Journal of dairy …, 2019 - Elsevier
An important goal in animal breeding is to improve longitudinal traits; that is, traits recorded
multiple times during an individual's lifetime or physiological cycle. Longitudinal traits were …

[HTML][HTML] Hot topic: a unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score

I Aguilar, I Misztal, DL Johnson, A Legarra… - Journal of dairy …, 2010 - Elsevier
The first national single-step, full-information (phenotype, pedigree, and marker genotype)
genetic evaluation was developed for final score of US Holsteins. Data included final scores …

[HTML][HTML] Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information

I Misztal, A Legarra, I Aguilar - Journal of dairy science, 2009 - Elsevier
Currently, genomic evaluations use multiple-step procedures, which are prone to biases and
errors. A single-step procedure may be applicable when genomic predictions can be …

[HTML][HTML] Using recursion to compute the inverse of the genomic relationship matrix

I Misztal, A Legarra, I Aguilar - Journal of dairy science, 2014 - Elsevier
Computing the inverse of the genomic relationship matrix using recursion was investigated.
A traditional algorithm to invert the numerator relationship matrix is based on the observation …

[PDF][PDF] Genomic selection in commercial pig breeding

EF Knol, B Nielsen, PW Knap - Animal Frontiers, 2016 - pdfs.semanticscholar.org
Implications• Leading pig breeding companies have implemented single-step evaluation for
genomic selection. Overall, this increases EBV accuracies by half.• Further improvement …

Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups

FL Macedo, OF Christensen, JM Astruc… - Genetics Selection …, 2020 - Springer
Background Bias has been reported in genetic or genomic evaluations of several species.
Common biases are systematic differences between averages of estimated and true …

Efficient computation of the genomic relationship matrix and other matrices used in single‐step evaluation

I Aguilar, I Misztal, A Legarra… - Journal of Animal …, 2011 - Wiley Online Library
Genomic evaluations can be calculated using a unified procedure that combines
phenotypic, pedigree and genomic information. Implementation of such a procedure …

[HTML][HTML] Multiple-trait genomic evaluation of linear type traits using genomic and phenotypic data in US Holsteins

S Tsuruta, I Misztal, I Aguilar, TJ Lawlor - Journal of Dairy Science, 2011 - Elsevier
Currently, the USDA uses a single-trait (ST) model with several intermediate steps to obtain
genomic evaluations for US Holsteins. In this study, genomic evaluations for 18 linear type …

Genetic evaluation for the beef industry in Australia

HU Graser, B Tier, DJ Johnston… - Australian Journal of …, 2005 - CSIRO Publishing
Genetic evaluation for beef cattle in Australia has been performed using an animal model
with best linear unbiased prediction since 1984. The evaluation procedures have evolved …