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[HTML][HTML] Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in BLUPF90
Single-step genomic evaluation became a standard procedure in livestock breeding, and
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …
[HTML][HTML] Invited review: Advances and applications of random regression models: From quantitative genetics to genomics
An important goal in animal breeding is to improve longitudinal traits; that is, traits recorded
multiple times during an individual's lifetime or physiological cycle. Longitudinal traits were …
multiple times during an individual's lifetime or physiological cycle. Longitudinal traits were …
[HTML][HTML] Hot topic: a unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score
The first national single-step, full-information (phenotype, pedigree, and marker genotype)
genetic evaluation was developed for final score of US Holsteins. Data included final scores …
genetic evaluation was developed for final score of US Holsteins. Data included final scores …
[HTML][HTML] Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information
Currently, genomic evaluations use multiple-step procedures, which are prone to biases and
errors. A single-step procedure may be applicable when genomic predictions can be …
errors. A single-step procedure may be applicable when genomic predictions can be …
[HTML][HTML] Using recursion to compute the inverse of the genomic relationship matrix
Computing the inverse of the genomic relationship matrix using recursion was investigated.
A traditional algorithm to invert the numerator relationship matrix is based on the observation …
A traditional algorithm to invert the numerator relationship matrix is based on the observation …
[PDF][PDF] Genomic selection in commercial pig breeding
Implications• Leading pig breeding companies have implemented single-step evaluation for
genomic selection. Overall, this increases EBV accuracies by half.• Further improvement …
genomic selection. Overall, this increases EBV accuracies by half.• Further improvement …
Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups
FL Macedo, OF Christensen, JM Astruc… - Genetics Selection …, 2020 - Springer
Background Bias has been reported in genetic or genomic evaluations of several species.
Common biases are systematic differences between averages of estimated and true …
Common biases are systematic differences between averages of estimated and true …
Efficient computation of the genomic relationship matrix and other matrices used in single‐step evaluation
Genomic evaluations can be calculated using a unified procedure that combines
phenotypic, pedigree and genomic information. Implementation of such a procedure …
phenotypic, pedigree and genomic information. Implementation of such a procedure …
[HTML][HTML] Multiple-trait genomic evaluation of linear type traits using genomic and phenotypic data in US Holsteins
Currently, the USDA uses a single-trait (ST) model with several intermediate steps to obtain
genomic evaluations for US Holsteins. In this study, genomic evaluations for 18 linear type …
genomic evaluations for US Holsteins. In this study, genomic evaluations for 18 linear type …
Genetic evaluation for the beef industry in Australia
HU Graser, B Tier, DJ Johnston… - Australian Journal of …, 2005 - CSIRO Publishing
Genetic evaluation for beef cattle in Australia has been performed using an animal model
with best linear unbiased prediction since 1984. The evaluation procedures have evolved …
with best linear unbiased prediction since 1984. The evaluation procedures have evolved …