Computational methods for identifying the critical nodes in biological networks

X Liu, Z Hong, J Liu, Y Lin… - Briefings in …, 2020 - academic.oup.com
A biological network is complex. A group of critical nodes determines the quality and state of
such a network. Increasing studies have shown that diseases and biological networks are …

Alveolar regeneration in COVID-19 patients: a network perspective

SK Gupta, M Srivastava, R Minocha, A Akash… - International Journal of …, 2021 - mdpi.com
A viral infection involves entry and replication of viral nucleic acid in a host organism,
subsequently leading to biochemical and structural alterations in the host cell. In the case of …

Discovering driver nodes in chronic kidney disease-related networks using Trader as a newly developed algorithm

Y Masoudi-Sobhanzadeh, A Gholaminejad… - Computers in Biology …, 2022 - Elsevier
Thanks to the advances in the field of computational-based biology, a huge volume of
disease-related data has been generated so far. From the existing data, the disease-related …

A graphical characterization of structurally controllable linear systems with dependent parameters

F Liu, AS Morse - IEEE Transactions on Automatic Control, 2019 - ieeexplore.ieee.org
One version of the concept of structural controllability defined for single-input systems by Lin
and subsequently generalized to multi-input systems by others, states that a parameterized …

Predicting hepatoma-related genes based on representation learning of PPI network and gene ontology annotations

T Wang, Z Shao, Y **ao, X Zhang… - 2021 IEEE …, 2021 - ieeexplore.ieee.org
Hepatoma is the most common type of primary liver cancer with a high mortality rate in the
world. The genetic causes of the disease pathology remain largely unknown. Effective …

PocaCNV: a tool to detect copy number variants from population-scale genome sequencing data

Z Zhang, Y Liu, G Li, Y Wang - 2021 IEEE International …, 2021 - ieeexplore.ieee.org
Among the procedures of modern genome analysis, the variation calling is a crucial part.
Copy Number Variation (CNV) is an important variation type, many algorithms are …

[HTML][HTML] Network-based observability and controllability analysis of dynamical systems: The NOCAD toolbox

D Leitold, Á Vathy-Fogarassy, J Abonyi - F1000Research, 2019 - ncbi.nlm.nih.gov
The network science-based determination of driver nodes and sensor placement has
become increasingly popular in the field of dynamical systems over the last decade. In this …

[BOOK][B] Structural Properties and Distributed Stabilization of Linear Systems

F Liu - 2020 - search.proquest.com
Four problems related to stabilization of linear systems are studied in this thesis. In the first
two problems, we address important structural properties for the stabilization of single …

The NOCAD MATLAB/Octave Toolbox Developed for the Analysis of Dynamical Systems

D Leitold, Á Vathy-Fogarassy, J Abonyi… - Network-Based Analysis …, 2020 - Springer
In this chapter, the functionality of the proposed Octave-and MATLAB-compatible network-
based observability and controllability analysis of dynamical systems (NOCAD) toolbox is …

[PDF][PDF] Dynamical Systems: the NOCAD toolbox [version 1; peer review

D Leitold, Á Vathy-Fogarassy, J Abonyi - Dynamical Systems, 2019 - researchgate.net
Network science has become increasingly important in life science over the last decade. The
proposed Octave and MATLAB-compatible NOCAD toolbox provides a set of methods which …