Transforming medical imaging with Transformers? A comparative review of key properties, current progresses, and future perspectives

J Li, J Chen, Y Tang, C Wang, BA Landman… - Medical image …, 2023 - Elsevier
Transformer, one of the latest technological advances of deep learning, has gained
prevalence in natural language processing or computer vision. Since medical imaging bear …

Vision transformer architecture and applications in digital health: a tutorial and survey

K Al-Hammuri, F Gebali, A Kanan… - Visual computing for …, 2023 - Springer
The vision transformer (ViT) is a state-of-the-art architecture for image recognition tasks that
plays an important role in digital health applications. Medical images account for 90% of the …

Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study

SJ Wagner, D Reisenbüchler, NP West, JM Niehues… - Cancer Cell, 2023 - cell.com
Deep learning (DL) can accelerate the prediction of prognostic biomarkers from routine
pathology slides in colorectal cancer (CRC). However, current approaches rely on …

A survey of Transformer applications for histopathological image analysis: New developments and future directions

CC Atabansi, J Nie, H Liu, Q Song, L Yan… - BioMedical Engineering …, 2023 - Springer
Transformers have been widely used in many computer vision challenges and have shown
the capability of producing better results than convolutional neural networks (CNNs). Taking …

[HTML][HTML] An aggregation of aggregation methods in computational pathology

M Bilal, R Jewsbury, R Wang, HM AlGhamdi, A Asif… - Medical Image …, 2023 - Elsevier
Image analysis and machine learning algorithms operating on multi-gigapixel whole-slide
images (WSIs) often process a large number of tiles (sub-images) and require aggregating …

Higt: Hierarchical interaction graph-transformer for whole slide image analysis

Z Guo, W Zhao, S Wang, L Yu - International Conference on Medical Image …, 2023 - Springer
In computation pathology, the pyramid structure of gigapixel Whole Slide Images (WSIs) has
recently been studied for capturing various information from individual cell interactions to …

[HTML][HTML] Social network analysis of cell networks improves deep learning for prediction of molecular pathways and key mutations in colorectal cancer

N Zamanitajeddin, M Jahanifar, M Bilal… - Medical Image …, 2024 - Elsevier
Colorectal cancer (CRC) is a primary global health concern, and identifying the molecular
pathways, genetic subtypes, and mutations associated with CRC is crucial for precision …

Transformer-Based Weakly Supervised Learning for Whole Slide Lung Cancer Image Classification

J An, Y Wang, Q Cai, G Zhao, S Dooper… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
Image analysis can play an important role in supporting histopathological diagnoses of lung
cancer, with deep learning methods already achieving remarkable results. However, due to …

Comprehensive review of Transformer‐based models in neuroscience, neurology, and psychiatry

S Cong, H Wang, Y Zhou, Z Wang, X Yao, C Yang - Brain‐X, 2024 - Wiley Online Library
This comprehensive review aims to clarify the growing impact of Transformer‐based models
in the fields of neuroscience, neurology, and psychiatry. Originally developed as a solution …

Partial-label contrastive representation learning for fine-grained biomarkers prediction from histopathology whole slide images

Y Zheng, K Wu, J Li, K Tang, J Shi, H Wu… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
In the domain of histopathology analysis, existing representation learning methods for
biomarkers prediction from whole slide images (WSIs) face challenges due to the complexity …