[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

Sediment source fingerprinting: benchmarking recent outputs, remaining challenges and emerging themes

AL Collins, M Blackwell, P Boeckx, CA Chivers… - Journal of Soils and …, 2020 - Springer
Purpose This review of sediment source fingerprinting assesses the current state-of-the-art,
remaining challenges and emerging themes. It combines inputs from international scientists …

The current state of eDNA research in freshwater ecosystems: Are we shifting from the developmental phase to standard application in biomonitoring?

T Schenekar - Hydrobiologia, 2023 - Springer
Environmental DNA (eDNA) has seen a massive increase in application in freshwater
systems with a concurrent growth in protocol developments and a drive to gain a better …

High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change

S Garcés-Pastor, E Coissac, S Lavergne… - Nature …, 2022 - nature.com
Abstract The European Alps are highly rich in species, but their future may be threatened by
ongoing changes in human land use and climate. Here, we reconstructed vegetation …

Sedimentary ancient DNA shows terrestrial plant richness continuously increased over the Holocene in northern Fennoscandia

DP Rijal, PD Heintzman, Y Lammers, NG Yoccoz… - Science …, 2021 - science.org
The effects of climate change on species richness are debated but can be informed by the
past. Here, we generated a sedimentary ancient DNA dataset covering 10 lakes and applied …

Environmental DNA of aquatic macrophytes: The potential for reconstructing past and present vegetation and environments

A Revéret, DP Rijal, PD Heintzman… - Freshwater …, 2023 - Wiley Online Library
Environmental DNA is increasingly being used to reconstruct past and present biodiversity
including from freshwater ecosystems. Macrophytes are especially good environmental …

Detection of fish sedimentary DNA in aquatic systems: A review of methodological challenges and future opportunities

GP Huston, MLD Lopez, Y Cheng, L King… - Environmental …, 2023 - Wiley Online Library
Environmental DNA studies have proliferated over the last decade, with promising data
describing the diversity of organisms inhabiting aquatic and terrestrial ecosystems. The …

Pleistocene glacial and interglacial ecosystems inferred from ancient DNA analyses of permafrost sediments from Batagay megaslump, East Siberia

J Courtin, A Perfumo, AA Andreev, T Opel… - Environmental …, 2022 - Wiley Online Library
Pronounced glacial and interglacial climate cycles characterized northern ecosystems
during the Pleistocene. Our understanding of the resultant community transformations and …

Long-term trajectories of mountain agro-ecosystems in the North-Western Alps

C Giguet-Covex, M Bajard, W Chen, KJ Walsh… - Regional Environmental …, 2023 - Springer
Past trajectories of alpine agroecosystems are legacies that we should consider to improve
our understanding of current responses to global environmental changes. By integrating …