[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

Sediment source fingerprinting: benchmarking recent outputs, remaining challenges and emerging themes

AL Collins, M Blackwell, P Boeckx, CA Chivers… - Journal of Soils and …, 2020 - Springer
Purpose This review of sediment source fingerprinting assesses the current state-of-the-art,
remaining challenges and emerging themes. It combines inputs from international scientists …

The current state of eDNA research in freshwater ecosystems: are we shifting from the developmental phase to standard application in biomonitoring?

T Schenekar - Hydrobiologia, 2023 - Springer
Environmental DNA (eDNA) has seen a massive increase in application in freshwater
systems with a concurrent growth in protocol developments and a drive to gain a better …

Sediment DNA can revolutionize archaeology—if it is used the right way

V Aldeias, MC Stahlschmidt - Proceedings of the National Academy of …, 2024 - pnas.org
The possibility of fingerprinting ancient organisms using the DNA they leave behind is a
revolution in our understanding of the past. Paleogenetic studies are rewriting our …

High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change

S Garcés-Pastor, E Coissac, S Lavergne… - Nature …, 2022 - nature.com
Abstract The European Alps are highly rich in species, but their future may be threatened by
ongoing changes in human land use and climate. Here, we reconstructed vegetation …

Importance of eDNA taphonomy and sediment provenance for robust ecological inference: Insights from interfacial geochemistry

KK Sand, S Jelavić, KH Kjær, A Prohaska - Environmental DNA, 2024 - Wiley Online Library
Retrieval of modern and ancient environmental DNA (eDNA) from sediments has
revolutionized our ability to study past and present ecosystems. Little emphasis has been …

[HTML][HTML] Sedimentary ancient DNA reveals past ecosystem and biodiversity changes on the Tibetan Plateau: Overview and prospects

W Jia, S Anslan, F Chen, X Cao, H Dong… - Quaternary Science …, 2022 - Elsevier
Alpine ecosystems on the Tibetan Plateau are being threatened by ongoing climate
warming and intensified human activities. Ecological time-series obtained from sedimentary …

Pleistocene glacial and interglacial ecosystems inferred from ancient DNA analyses of permafrost sediments from Batagay megaslump, East Siberia

J Courtin, A Perfumo, AA Andreev, T Opel… - Environmental …, 2022 - Wiley Online Library
Pronounced glacial and interglacial climate cycles characterized northern ecosystems
during the Pleistocene. Our understanding of the resultant community transformations and …

[HTML][HTML] Environmental DNA-based methods in biodiversity monitoring of protected areas: application range, limitations, and needs

K Pascher, V Švara, M Jungmeier - Diversity, 2022 - mdpi.com
Novel methods for species detection based on collection of environmental DNA (eDNA) are
not only important in biodiversity assessment in a scientific context, but are also increasingly …