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[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
Foodomics: A new approach in food quality and safety
Background. The progress in the analytical methods in food science and technology brought
about a novel and modern approach concerning human health and food quality and safety …
about a novel and modern approach concerning human health and food quality and safety …
[HTML][HTML] Regulation of vitamin C accumulation for improved tomato fruit quality and alleviation of abiotic stress
Ascorbic acid (AsA) is an essential multifaceted phytonutrient for both the human diet and
plant growth. Optimum levels of AsA accumulation combined with balanced redox …
plant growth. Optimum levels of AsA accumulation combined with balanced redox …
scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured
A pressing challenge in single-cell transcriptomics is to benchmark experimental protocols
and computational methods. A solution is to use computational simulators, but existing …
and computational methods. A solution is to use computational simulators, but existing …
Hypergraph geometry reflects higher-order dynamics in protein interaction networks
Protein interactions form a complex dynamic molecular system that shapes cell phenotype
and function; in this regard, network analysis is a powerful tool for studying the dynamics of …
and function; in this regard, network analysis is a powerful tool for studying the dynamics of …
Transcriptomic and metabolomic approaches deepen our knowledge of plant–endophyte interactions
X Chen, M Sun, S Chong, J Si, L Wu - Frontiers in Plant Science, 2022 - frontiersin.org
In natural systems, plant–symbiont–pathogen interactions play important roles in mitigating
abiotic and biotic stresses in plants. Symbionts have their own special recognition ways, but …
abiotic and biotic stresses in plants. Symbionts have their own special recognition ways, but …
RNA sequencing and its applications in cancer and rare diseases
S Ergin, N Kherad, M Alagoz - Molecular Biology Reports, 2022 - Springer
With the invention of RNA sequencing over a decade ago, diagnosis and identification of the
gene-related diseases entered a new phase that enabled more accurate analysis of the …
gene-related diseases entered a new phase that enabled more accurate analysis of the …
Recommendations for statistical reporting in cardiovascular medicine: a special report from the American Heart Association
Statistical analyses are a crucial component of the biomedical research process and are
necessary to draw inferences from biomedical research data. The application of sound …
necessary to draw inferences from biomedical research data. The application of sound …
bakR: uncovering differential RNA synthesis and degradation kinetics transcriptome-wide with Bayesian hierarchical modeling
Differential expression analysis of RNA sequencing (RNA-seq) data can identify changes in
cellular RNA levels, but provides limited information about the kinetic mechanisms …
cellular RNA levels, but provides limited information about the kinetic mechanisms …
Systematic analysis of 1298 RNA‐Seq samples and construction of a comprehensive soybean (Glycine max) expression atlas
SUMMARY Soybean (Glycine max [L.] Merr.) is a major crop in animal feed and human
nutrition, mainly for its rich protein and oil contents. The remarkable rise in soybean …
nutrition, mainly for its rich protein and oil contents. The remarkable rise in soybean …