Loop dynamics and the evolution of enzyme activity

M Corbella, GP Pinto, SCL Kamerlin - Nature Reviews Chemistry, 2023 - nature.com
In the early 2000s, Tawfik presented his 'New View'on enzyme evolution, highlighting the
role of conformational plasticity in expanding the functional diversity of limited repertoires of …

A three-ring circus: metabolism of the three proteogenic aromatic amino acids and their role in the health of plants and animals

A Parthasarathy, PJ Cross, RCJ Dobson… - Frontiers in molecular …, 2018 - frontiersin.org
Tyrosine, phenylalanine and tryptophan are the three aromatic amino acids (AAA) involved
in protein synthesis. These amino acids and their metabolism are linked to the synthesis of a …

Catalytic Versatility, Stability, and Evolution of the (βα)8-Barrel Enzyme Fold

R Sterner, B Höcker - Chemical Reviews, 2005 - ACS Publications
Natural evolution has yielded enzymes that catalyze virtually all metabolic reactions under
mild conditions with high specificities and enormous rate enhancements. 1 It has been a …

Biosynthesis of histidine

ME Winkler, S Ramos-Montañez - EcoSal Plus, 2009 - Am Soc Microbiol
The biosynthesis of histidine in Escherichia coli and Salmonella typhimurium has been an
important model system for the study of relationships between the flow of intermediates …

Conformational Modulation of a Mobile Loop Controls Catalysis in the (βα)8-Barrel Enzyme of Histidine Biosynthesis HisF

E Hupfeld, S Schlee, JP Wurm, C Rajendran… - JACS Au, 2024 - ACS Publications
The overall significance of loop motions for enzymatic activity is generally accepted.
However, it has largely remained unclear whether and how such motions can control …

Mimicking enzyme evolution by generating new (βα)8-barrels from (βα)4-half-barrels

B Höcker, J Claren, R Sterner - Proceedings of the National …, 2004 - National Acad Sciences
Gene duplication and fusion events that multiply and link functional protein domains are
crucial mechanisms of enzyme evolution. The analysis of amino acid sequences and three …

1-Amino-1-deoxy-D-fructose (“fructosamine”) and its derivatives

VV Mossine, TP Mawhinney - Advances in carbohydrate chemistry and …, 2010 - Elsevier
Fructosamine has long been considered as a key intermediate of the Maillard reaction,
which to a large extent is responsible for specific aroma, taste, and color formation in …

Evolutionary convergence in the biosyntheses of the imidazole moieties of histidine and purines

A Vázquez-Salazar, A Becerra, A Lazcano - PloS one, 2018 - journals.plos.org
Background The imidazole group is an ubiquitous chemical motif present in several key
types of biomolecules. It is a structural moiety of purines, and plays a central role in …

Occurrence of a putative ancient‐like isomerase involved in histidine and tryptophan biosynthesis

F Barona‐Gómez, DA Hodgson - EMBO reports, 2003 - embopress.org
We report the occurrence of an isomerase with a putative (βα) 8‐barrel structure involved in
both histidine and trypto‐phan biosynthesis in Streptomyces coelicolor A3 (2) and …

Complex Loop Dynamics Underpin Activity, Specificity, and Evolvability in the (βα)8 Barrel Enzymes of Histidine and Tryptophan Biosynthesis

A Romero-Rivera, M Corbella, A Parracino, WM Patrick… - JACS Au, 2022 - ACS Publications
Enzymes are conformationally dynamic, and their dynamical properties play an important
role in regulating their specificity and evolvability. In this context, substantial attention has …