Comparing the topology of phylogenetic network generators

R Janssen, P Liu - Journal of bioinformatics and computational …, 2021 - World Scientific
Phylogenetic networks represent evolutionary history of species and can record natural
reticulate evolutionary processes such as horizontal gene transfer and gene recombination …

Identifiability of species network topologies from genomic sequences using the logDet distance

ES Allman, H Baños, JA Rhodes - Journal of mathematical biology, 2022 - Springer
Inference of network-like evolutionary relationships between species from genomic data
must address the interwoven signals from both gene flow and incomplete lineage sorting …

The tree of blobs of a species network: identifiability under the coalescent

ES Allman, H Baños, JD Mitchell, JA Rhodes - Journal of mathematical …, 2023 - Springer
Inference of species networks from genomic data under the Network Multispecies
Coalescent Model is currently severely limited by heavy computational demands. It also …

[PDF][PDF] Reconstruction of Phylogenetic Networks

R Mol - repository.tudelft.nl
Traditionally in phylogenetics, the evolutionary history of organisms is represented in a tree
structure. However, tree structures might not give a complete picture of the evolution of …

[HTML][HTML] Level-2 networks from shortest and longest distances

KT Huber, L van Iersel, R Janssen, M Jones… - Discrete Applied …, 2022 - Elsevier
Recently it was shown that a certain class of phylogenetic networks, called level-2 networks,
cannot be reconstructed from their associated distance matrices. In this paper, we show that …