Progress in soybean functional genomics over the past decade

M Zhang, S Liu, Z Wang, Y Yuan… - Plant Biotechnology …, 2022 - Wiley Online Library
Soybean is one of the most important oilseed and fodder crops. Benefiting from the efforts of
soybean breeders and the development of breeding technology, large number of …

Transport and metabolism in legume-rhizobia symbioses

M Udvardi, PS Poole - Annual review of plant biology, 2013 - annualreviews.org
Symbiotic nitrogen fixation by rhizobia in legume root nodules injects approximately 40
million tonnes of nitrogen into agricultural systems each year. In exchange for reduced …

Rhizobial tRNA-derived small RNAs are signal molecules regulating plant nodulation

B Ren, X Wang, J Duan, J Ma - Science, 2019 - science.org
Rhizobial infection and root nodule formation in legumes require recognition of signal
molecules produced by the bacteria and their hosts. Here, we show that rhizobial transfer …

Targeted mutagenesis in soybean using the CRISPR-Cas9 system

X Sun, Z Hu, R Chen, Q Jiang, G Song, H Zhang… - Scientific reports, 2015 - nature.com
Genome editing is a valuable technique for gene function analysis and crop improvement.
Over the past two years, the CRISPR-Cas9 system has emerged as a powerful tool for …

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser‐capture microdissection coupled to RNA sequencing

B Roux, N Rodde, MF Jardinaud, T Timmers… - The Plant …, 2014 - Wiley Online Library
Rhizobium‐induced root nodules are specialized organs for symbiotic nitrogen fixation.
Indeterminate‐type nodules are formed from an apical meristem and exhibit a spatial …

A foundational large language model for edible plant genomes

J Mendoza-Revilla, E Trop, L Gonzalez… - Communications …, 2024 - nature.com
Significant progress has been made in the field of plant genomics, as demonstrated by the
increased use of high-throughput methodologies that enable the characterization of multiple …

Mining and development of novel SSR markers using next generation sequencing (NGS) data in plants

S Taheri, T Lee Abdullah, MR Yusop, MM Hanafi… - Molecules, 2018 - mdpi.com
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and
multi-purpose genetic markers exploited in plant functional genomics. However, the …

Genome-wide analysis of the MYB transcription factor superfamily in soybean

H Du, SS Yang, Z Liang, BR Feng, L Liu, YB Huang… - BMC plant biology, 2012 - Springer
Background The MYB superfamily constitutes one of the most abundant groups of
transcription factors described in plants. Nevertheless, their functions appear to be highly …

Drought stress responses in soybean roots and nodules

KJ Kunert, BJ Vorster, BA Fenta, T Kibido… - Frontiers in plant …, 2016 - frontiersin.org
Drought is considered to be a major threat to soybean production worldwide and yet our
current understanding of the effects of drought on soybean productively is largely based on …

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

AV Protasio, IJ Tsai, A Babbage, S Nichol… - PLoS neglected …, 2012 - journals.plos.org
Schistosomiasis is one of the most prevalent parasitic diseases, affecting millions of people
in develo** countries. Amongst the human-infective species, Schistosoma mansoni is also …