Data‐driven materials innovation and applications

Z Wang, Z Sun, H Yin, X Liu, J Wang, H Zhao… - Advanced …, 2022 - Wiley Online Library
Owing to the rapid developments to improve the accuracy and efficiency of both
experimental and computational investigative methodologies, the massive amounts of data …

The CCP4 suite: integrative software for macromolecular crystallography

J Agirre, M Atanasova, H Bagdonas… - Biological …, 2023 - journals.iucr.org
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective
with a mission to develop, test, distribute and promote software for macromolecular …

Principles and Applications of CF2X Moieties as Unconventional Halogen Bond Donors in Medicinal Chemistry, Chemical Biology, and Drug Discovery

S Vaas, MO Zimmermann, D Schollmeyer… - Journal of Medicinal …, 2023 - ACS Publications
As an orthogonal principle to the established (hetero) aryl halides, we herein highlight the
usefulness of CF2X (X= Cl, Br, or I) moieties. Using tool compounds bearing CF2X moieties …

Akkermansia muciniphila phospholipid induces homeostatic immune responses

M Bae, CD Cassilly, X Liu, SM Park, BK Tusi, X Chen… - Nature, 2022 - nature.com
Multiple studies have established associations between human gut bacteria and host
physiology, but determining the molecular mechanisms underlying these associations has …

Chemical remodeling of a cellular chaperone to target the active state of mutant KRAS

CJ Schulze, KJ Seamon, Y Zhao, YC Yang, J Cregg… - Science, 2023 - science.org
The discovery of small-molecule inhibitors requires suitable binding pockets on protein
surfaces. Proteins that lack this feature are considered undruggable and require innovative …

Crystallographic and electrophilic fragment screening of the SARS-CoV-2 main protease

A Douangamath, D Fearon, P Gehrtz, T Krojer… - Nature …, 2020 - nature.com
Abstract COVID-19, caused by SARS-CoV-2, lacks effective therapeutics. Additionally, no
antiviral drugs or vaccines were developed against the closely related coronavirus, SARS …

Current developments in Coot for macromolecular model building of Electron Cryo‐microscopy and Crystallographic Data

A Casañal, B Lohkamp, P Emsley - Protein Science, 2020 - Wiley Online Library
Coot is a tool widely used for model building, refinement, and validation of macromolecular
structures. It has been extensively used for crystallography and, more recently …

Template-assisted covalent modification underlies activity of covalent molecular glues

YD Li, MW Ma, MM Hassan, M Hunkeler… - Nature Chemical …, 2024 - nature.com
Molecular glues are proximity-inducing small molecules that have emerged as an attractive
therapeutic approach. However, develo** molecular glues remains challenging, requiring …

Structural basis of nirmatrelvir and ensitrelvir activity against naturally occurring polymorphisms of the SARS-CoV-2 main protease

GD Noske, E de Souza Silva, MO de Godoy… - Journal of Biological …, 2023 - jbc.org
SARS-CoV-2 is the causative agent of COVID-19. The main viral protease (M pro) is an
attractive target for antivirals. The clinically approved drug nirmatrelvir and the clinical …

[HTML][HTML] CCP4i2: the new graphical user interface to the CCP4 program suite

L Potterton, J Agirre, C Ballard, K Cowtan… - Biological …, 2018 - journals.iucr.org
The CCP4 (Collaborative Computational Project, Number 4) software suite for
macromolecular structure determination by X-ray crystallography groups brings together …