The gut microbiome and metabolic syndrome

K Dabke, G Hendrick, S Devkota - The Journal of clinical …, 2019 - Am Soc Clin Investig
The metabolic syndrome (MetS) is a constellation of risk factors that, if left untreated, will
often progress to greater metabolic defects such as type 2 diabetes and nonalcoholic fatty …

Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

Microbiotas from humans with inflammatory bowel disease alter the balance of gut Th17 and RORγt+ regulatory T cells and exacerbate colitis in mice

GJ Britton, EJ Contijoch, I Mogno, OH Vennaro… - Immunity, 2019 - cell.com
Microbiota are thought to influence the development and progression of inflammatory bowel
disease (IBD), but determining generalizable effects of microbiota on IBD etiology requires …

The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota

JC Lagier, P Hugon, S Khelaifia… - Clinical microbiology …, 2015 - Am Soc Microbiol
Bacterial culture was the first method used to describe the human microbiota, but this
method is considered outdated by many researchers. Metagenomics studies have since …

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

PD Schloss, D Gevers, SL Westcott - PloS one, 2011 - journals.plos.org
The advent of next generation sequencing has coincided with a growth in interest in using
these approaches to better understand the role of the structure and function of the microbial …

Revisiting the role of the granuloma in tuberculosis

L Ramakrishnan - Nature Reviews Immunology, 2012 - nature.com
The granuloma, which is a compact aggregate of immune cells, is the hallmark structure of
tuberculosis. It is historically regarded as a host-protective structure that'walls off'the infecting …

The role of the tumor microbe microenvironment in the tumor immune microenvironment: bystander, activator, or inhibitor?

J Ma, L Huang, D Hu, S Zeng, Y Han… - Journal of Experimental & …, 2021 - Springer
The efficacy of cancer immunotherapy largely depends on the tumor microenvironment,
especially the tumor immune microenvironment. Emerging studies have claimed that …

The perpetual challenge of infectious diseases

AS Fauci, DM Morens - New England journal of medicine, 2012 - Mass Medical Soc
During the past 200 years, our understanding of infectious diseases has radically evolved
from the identification of microbes, to defining their genetic structure, to the development of …

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

RI Amann, W Ludwig, KH Schleifer - Microbiological reviews, 1995 - Am Soc Microbiol
The frequent discrepancy between direct microscopic counts and numbers of culturable
bacteria from environmental samples is just one of several indications that we currently …

Metagenomic biomarker discovery and explanation

N Segata, J Izard, L Waldron, D Gevers, L Miropolsky… - Genome biology, 2011 - Springer
This study describes and validates a new method for metagenomic biomarker discovery by
way of class comparison, tests of biological consistency and effect size estimation. This …