There and back again; historical perspective and future directions for Vaccinium breeding and research studies
Abstract The genus Vaccinium L.(Ericaceae) contains a wide diversity of culturally and
economically important berry crop species. Consumer demand and scientific research in …
economically important berry crop species. Consumer demand and scientific research in …
Genetic and genomic resources for Rubus breeding: a roadmap for the future
Rubus fruits are high-value crops that are sought after by consumers for their flavor, visual
appeal, and health benefits. To meet this demand, production of red and black raspberries …
appeal, and health benefits. To meet this demand, production of red and black raspberries …
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning …
Cultivated potato is a clonally propagated autotetraploid species with a highly
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …
polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids
Low or uneven read depth is a common limitation of genoty**-by-sequencing (GBS) and
restriction site-associated DNA sequencing (RAD-seq), resulting in high missing data rates …
restriction site-associated DNA sequencing (RAD-seq), resulting in high missing data rates …
In the name of the rose: a roadmap for rose research in the genome era
The recent completion of the rose genome sequence is not the end of a process, but rather a
starting point that opens up a whole set of new and exciting activities. Next to a high-quality …
starting point that opens up a whole set of new and exciting activities. Next to a high-quality …
Genomic regions associated with tuber traits in tetraploid potatoes and identification of superior clones for breeding purposes
In potato breeding, morphological tuber traits are important selection targets to meet the
demands of the fresh and processing markets. Understanding the genetic basis of tuber …
demands of the fresh and processing markets. Understanding the genetic basis of tuber …
Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models
Modern SNP genoty** technologies allow measurement of the relative abundance of
different alleles for a given locus and consequently estimation of their allele dosage …
different alleles for a given locus and consequently estimation of their allele dosage …
Sequencing and assembly of polyploid genomes
Y Wang, J Yu, M Jiang, W Lei, X Zhang… - Polyploidy: methods and …, 2023 - Springer
Polyploidy has been observed throughout major eukaryotic clades and has played a vital
role in the evolution of angiosperms. Recent polyploidizations often result in highly complex …
role in the evolution of angiosperms. Recent polyploidizations often result in highly complex …
Multiple QTL map** in autopolyploids: a random-effect model approach with application in a hexaploid sweetpotato full-sib population
Genetic analysis in autopolyploids is a very complicated subject due to the enormous
number of genotypes at a locus that needs to be considered. For instance, the number of... In …
number of genotypes at a locus that needs to be considered. For instance, the number of... In …
High-resolution linkage map and QTL analyses of fruit firmness in autotetraploid blueberry
Blueberry (Vaccinium corymbosum and hybrids) is an autotetraploid crop whose commercial
relevance has been growing steadily during the last 20 years. However, the ever-increasing …
relevance has been growing steadily during the last 20 years. However, the ever-increasing …