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Mass spectrometry-based metabolomics in microbiome investigations
Microbiotas are a malleable part of ecosystems, including the human ecosystem.
Microorganisms affect not only the chemistry of their specific niche, such as the human gut …
Microorganisms affect not only the chemistry of their specific niche, such as the human gut …
The microbiome and human cancer
BACKGROUND Historical accounts linking cancer and microbes date as early as four
millennia ago. After establishment of the germ theory of infectious diseases, clinical research …
millennia ago. After establishment of the germ theory of infectious diseases, clinical research …
Greengenes2 unifies microbial data in a single reference tree
Studies using 16S rRNA and shotgun metagenomics typically yield different results, usually
attributed to PCR amplification biases. We introduce Greengenes2, a reference tree that …
attributed to PCR amplification biases. We introduce Greengenes2, a reference tree that …
Sangerbox: a comprehensive, interaction‐friendly clinical bioinformatics analysis platform
In recent decades, with the continuous development of high‐throughput sequencing
technology, data volume in medical research has increased, at the same time, almost all …
technology, data volume in medical research has increased, at the same time, almost all …
Majorbio Cloud: a one‐stop, comprehensive bioinformatic platform for multiomics analyses
The rapid developments of high‐throughput sequencing technology in the last decade
allowed the emergence of multiomics analyses. Analytic platforms for high‐throughput omics …
allowed the emergence of multiomics analyses. Analytic platforms for high‐throughput omics …
OmicStudio: a composable bioinformatics cloud platform with real‐time feedback that can generate high‐quality graphs for publication
F Lyu, F Han, C Ge, W Mao, L Chen, H Hu, G Chen… - Imeta, 2023 - pmc.ncbi.nlm.nih.gov
OmicStudio focuses on speed, quality together with flexibility. Generally, OmicStudio can not
only meet the users' demand of ordinary bioinformatics data analysis, statistics, and …
only meet the users' demand of ordinary bioinformatics data analysis, statistics, and …
Insulin-regulated serine and lipid metabolism drive peripheral neuropathy
Diabetes represents a spectrum of disease in which metabolic dysfunction damages
multiple organ systems including liver, kidneys and peripheral nerves,. Although the onset …
multiple organ systems including liver, kidneys and peripheral nerves,. Although the onset …
Gut microbiome of multiple sclerosis patients and paired household healthy controls reveal associations with disease risk and course
X Zhou, R Baumann, X Gao, M Mendoza, S Singh… - Cell, 2022 - cell.com
Changes in gut microbiota have been associated with several diseases. Here, the
International Multiple Sclerosis Microbiome Study (iMSMS) studied the gut microbiome of …
International Multiple Sclerosis Microbiome Study (iMSMS) studied the gut microbiome of …
Microbiome differential abundance methods produce different results across 38 datasets
Identifying differentially abundant microbes is a common goal of microbiome studies.
Multiple methods are used interchangeably for this purpose in the literature. Yet, there are …
Multiple methods are used interchangeably for this purpose in the literature. Yet, there are …
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …
challenging and hampers insights into the structure and function of microbial communities …