Methods for map** 3D chromosome architecture

R Kempfer, A Pombo - Nature Reviews Genetics, 2020 - nature.com
Determining how chromosomes are positioned and folded within the nucleus is critical to
understanding the role of chromatin topology in gene regulation. Several methods are …

The 4D nucleome project

J Dekker, AS Belmont, M Guttman, VO Leshyk, JT Lis… - Nature, 2017 - nature.com
Abstract The 4D Nucleome Network aims to develop and apply approaches to map the
structure and dynamics of the human and mouse genomes in space and time with the goal …

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition

IM Flyamer, J Gassler, M Imakaev, HB Brandão… - Nature, 2017 - nature.com
Chromatin is reprogrammed after fertilization to produce a totipotent zygote with the potential
to generate a new organism. The maternal genome inherited from the oocyte and the …

Complex multi-enhancer contacts captured by genome architecture map**

RA Beagrie, A Scialdone, M Schueler, DCA Kraemer… - Nature, 2017 - nature.com
The organization of the genome in the nucleus and the interactions of genes with their
regulatory elements are key features of transcriptional control and their disruption can cause …

Three-dimensional genome architecture: players and mechanisms

A Pombo, N Dillon - Nature reviews Molecular cell biology, 2015 - nature.com
The different cell types of an organism share the same DNA, but during cell differentiation
their genomes undergo diverse structural and organizational changes that affect gene …

Genome-wide map** and analysis of chromosome architecture

AD Schmitt, M Hu, B Ren - Nature reviews Molecular cell biology, 2016 - nature.com
Chromosomes of eukaryotes adopt highly dynamic and complex hierarchical structures in
the nucleus. The three-dimensional (3D) organization of chromosomes profoundly affects …

The hierarchy of the 3D genome

JH Gibcus, J Dekker - Molecular cell, 2013 - cell.com
Mammalian genomes encode genetic information in their linear sequence, but appropriate
expression of their genes requires chromosomes to fold into complex three-dimensional …

An overview of genome organization and how we got there: from FISH to Hi-C

J Fraser, I Williamson, WA Bickmore… - … and Molecular Biology …, 2015 - Am Soc Microbiol
In humans, nearly two meters of genomic material must be folded to fit inside each
micrometer-scale cell nucleus while remaining accessible for gene transcription, DNA …

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on **st RNA

E Splinter, E de Wit, EP Nora, P Klous… - Genes & …, 2011 - genesdev.cshlp.org
Three-dimensional topology of DNA in the cell nucleus provides a level of transcription
regulation beyond the sequence of the linear DNA. To study the relationship between the …

Transcription factories: genome organization and gene regulation

A Papantonis, PR Cook - Chemical reviews, 2013 - ACS Publications
All eukaryotic cells contain four RNA polymerases originally defined by their sensitivity to
different drugs, and now by the sets of genes they transcribe. 1− 4 Polymerase I produces …