The roles of histone deacetylases and their inhibitors in cancer therapy
G Li, Y Tian, WG Zhu - Frontiers in cell and developmental biology, 2020 - frontiersin.org
Genetic mutations and abnormal gene regulation are key mechanisms underlying
tumorigenesis. Nucleosomes, which consist of DNA wrapped around histone cores …
tumorigenesis. Nucleosomes, which consist of DNA wrapped around histone cores …
Nascent RNA analyses: tracking transcription and its regulation
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …
genome. Decoding of this information begins with regulated transcription of genomic DNA …
RNA polymerase II dynamics shape enhancer–promoter interactions
How enhancers control target gene expression over long genomic distances remains an
important unsolved problem. Here we investigated enhancer–promoter communication by …
important unsolved problem. Here we investigated enhancer–promoter communication by …
Integrator endonuclease drives promoter-proximal termination at all RNA polymerase II-transcribed loci
Summary RNA polymerase II (RNAPII) pausing in early elongation is critical for gene
regulation. Paused RNAPII can be released into productive elongation by the kinase P-TEFb …
regulation. Paused RNAPII can be released into productive elongation by the kinase P-TEFb …
EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species
Enhancers are distal cis-regulatory elements that activate the transcription of their target
genes. They regulate a wide range of important biological functions and processes …
genes. They regulate a wide range of important biological functions and processes …
Prediction of histone post-translational modification patterns based on nascent transcription data
Z Wang, AG Chivu, LA Choate, EJ Rice, DC Miller… - Nature …, 2022 - nature.com
The role of histone modifications in transcription remains incompletely understood. Here, we
examine the relationship between histone modifications and transcription using …
examine the relationship between histone modifications and transcription using …
Widespread transcriptional pausing and elongation control at enhancers
T Henriques, BS Scruggs, MO Inouye… - Genes & …, 2018 - genesdev.cshlp.org
Regulation by gene-distal enhancers is critical for cell type-specific and condition-specific
patterns of gene expression. Thus, to understand the basis of gene activity in a given cell …
patterns of gene expression. Thus, to understand the basis of gene activity in a given cell …
Mammalian heat shock response and mechanisms underlying its genome-wide transcriptional regulation
The heat shock response (HSR) is critical for survival of all organisms. However, its scope,
extent, and the molecular mechanism of regulation are poorly understood. Here we show …
extent, and the molecular mechanism of regulation are poorly understood. Here we show …
Evaluating enhancer function and transcription
Cell-type-and condition-specific profiles of gene expression require coordination between
protein-coding gene promoters and cis-regulatory sequences called enhancers. Enhancers …
protein-coding gene promoters and cis-regulatory sequences called enhancers. Enhancers …
[HTML][HTML] Global identification of SWI/SNF targets reveals compensation by EP400
Mammalian SWI/SNF chromatin remodeling complexes move and evict nucleosomes at
gene promoters and enhancers to modulate DNA access. Although SWI/SNF subunits are …
gene promoters and enhancers to modulate DNA access. Although SWI/SNF subunits are …