Isomorphic fluorescent nucleosides

Y Tor - Accounts of Chemical Research, 2024 - ACS Publications
Conspectus In 1960, Weber prophesied that “There are many ways in which the properties
of the excited state can be utilized to study points of ignorance of the structure and function …

Modified nucleobases

S Matsika - Photoinduced Phenomena in Nucleic Acids I …, 2015 - Springer
Various molecules which are similar to the natural nucleobases exist in nature or have been
synthetically developed. In this chapter we review work on the photophysical properties of …

CRISPR-Cas9 recognition of enzymatically synthesized base-modified nucleic acids

H Yang, E Eremeeva, M Abramov… - Nucleic Acids …, 2023 - academic.oup.com
An enzymatic method has been successfully established enabling the generation of partially
base-modified RNA (previously named RZA) constructs, in which all G residues were …

Expanding a fluorescent RNA alphabet: synthesis, photophysics and utility of isothiazole-derived purine nucleoside surrogates

AR Rovira, A Fin, Y Tor - Chemical science, 2017 - pubs.rsc.org
A series of emissive ribonucleoside purine mimics, all comprised of an isothiazolo [4, 3-d]
pyrimidine core, was prepared using a divergent pathway involving a key Thorpe–Ziegler …

Tautomers of a fluorescent G surrogate and their distinct photophysics provide additional information channels

M Sholokh, R Improta, M Mori, R Sharma… - Angewandte Chemie …, 2016 - Wiley Online Library
Thienoguanosine (thG) is an isomorphic nucleoside analogue acting as a faithful fluorescent
substitute of G, with respectable quantum yield in oligonucleotides. Photophysical analysis …

Polymerase‐mediated site‐specific incorporation of a synthetic fluorescent isomorphic G surrogate into RNA

Y Li, A Fin, L McCoy, Y Tor - Angewandte Chemie International …, 2017 - Wiley Online Library
An enzyme‐mediated approach for the assembly of singly modified RNA constructs in which
specific G residues are replaced with thG, an emissive isomorphic G surrogate, is reported …

Unveiling structural and energetic characterization of the emissive RNA alphabet anchored in the methylthieno [3, 4-d] pyrimidine heterocycle core

M Chawla, A Poater, R Oliva, L Cavallo - Physical Chemistry Chemical …, 2024 - pubs.rsc.org
This study presents a comprehensive theoretical exploration of the fluorescent non-natural
emissive nucleobases-mthA, mthG, mthC, and mthU derived from the methylthieno [3, 4-d] …

Emissive Synthetic Cofactors: Enzymatic Interconversions of tzA Analogues of ATP, NAD+, NADH, NADP+, and NADPH

F Hallé, A Fin, AR Rovira, Y Tor - … Chemie International Edition, 2018 - Wiley Online Library
A series of enzymatic transformations, which generate visibly emissive isofunctional
cofactors based on an isothiazolo [4, 3‐d] pyrimidine analogue of adenosine (tzA), was …

Theoretical characterization of sulfur-to-selenium substitution in an emissive RNA alphabet: impact on H-bonding potential and photophysical properties

M Chawla, A Poater, P Besalú-Sala, K Kalra… - Physical Chemistry …, 2018 - pubs.rsc.org
We employ density functional theory (DFT) and time-dependent DFT (TDDFT) calculations to
investigate the structural, energetic and optical properties of a new computationally …

Structural and energetic characterization of the emissive RNA alphabet based on the isothiazolo [4, 3-d] pyrimidine heterocycle core

M Chawla, A Poater, R Oliva, L Cavallo - Physical Chemistry Chemical …, 2016 - pubs.rsc.org
We present theoretical characterization of fluorescent non-natural nucleobases, tzA, tzG,
tzC, and tzU, derived from the isothiazolo [4, 3-d] pyrimidine heterocycle. Consistent with the …