Nosocomial transmission and outbreaks of coronavirus disease 2019: the need to protect both patients and healthcare workers

M Abbas, T Robalo Nunes, R Martischang… - … Resistance & Infection …, 2021 - Springer
Objectives To compile current published reports on nosocomial outbreaks of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), evaluate the role of healthcare workers …

HIV subtype diversity worldwide

N Bbosa, P Kaleebu, D Ssemwanga - Current Opinion in HIV and …, 2019 - journals.lww.com
The dynamic change in HIV subtype distribution presents future challenges for diagnosis,
treatment and vaccine design and development. An increase in recombinant viruses …

Persistent HIV-1 replication maintains the tissue reservoir during therapy

R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim… - Nature, 2016 - nature.com
Lymphoid tissue is a key reservoir established by HIV-1 during acute infection. It is a site
associated with viral production, storage of viral particles in immune complexes, and viral …

Infectious disease transmission and contact networks in wildlife and livestock

ME Craft - … Transactions of the Royal Society B …, 2015 - royalsocietypublishing.org
The use of social and contact networks to answer basic and applied questions about
infectious disease transmission in wildlife and livestock is receiving increased attention …

An overview of malaria transmission mechanisms, control, and modeling

MK Savi - Medical Sciences, 2022 - mdpi.com
In sub-Saharan Africa, malaria is a leading cause of mortality and morbidity. As a result of
the interplay between many factors, the control of this disease can be challenging. However …

Phylodynamics for cell biologists

T Stadler, OG Pybus, MPH Stumpf - Science, 2021 - science.org
BACKGROUND The birth, death, and diversification of individuals are events that drive
biological processes across all scales. This is true whether the individuals in question …

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

C Mavian, SK Pond, S Marini, BR Magalis… - Proceedings of the …, 2020 - pnas.org
There is obvious interest in gaining insights into the epidemiology and evolution of the virus
that has recently emerged in humans as the cause of the coronavirus disease 2019 (COVID …

Approaches and challenges to inferring the geographical source of infectious disease outbreaks using genomic data

Z Chen, P Lemey, H Yu - The Lancet Microbe, 2024 - thelancet.com
Genomic data hold increasing potential in the elucidation of transmission dynamics and
geographical sources of infectious disease outbreaks. Phylogeographic methods that use …

[HTML][HTML] Epidemics on dynamic networks

J Enright, RR Kao - Epidemics, 2018 - Elsevier
In many populations, the patterns of potentially infectious contacts are transients that can be
described as a network with dynamic links. The relative timescales of link and contagion …

Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model …

M Layan, NF Müller, S Dellicour, N De Maio… - Virus …, 2023 - academic.oup.com
Bayesian phylogeographic inference is a powerful tool in molecular epidemiological studies,
which enables reconstruction of the origin and subsequent geographic spread of pathogens …