G-quadruplexes and their ligands: Biophysical methods to unravel G-quadruplex/ligand interactions

T Santos, GF Salgado, EJ Cabrita, C Cruz - Pharmaceuticals, 2021 - mdpi.com
Progress in the design of G-quadruplex (G4) binding ligands relies on the availability of
approaches that assess the binding mode and nature of the interactions between G4 …

[HTML][HTML] Structural unfolding of G-quadruplexes: From small molecules to antisense strategies

G Fracchioni, S Vailati, M Grazioli, V Pirota - Molecules, 2024 - mdpi.com
G-quadruplexes (G4s) are non-canonical nucleic acid secondary structures that have
gathered significant interest in medicinal chemistry over the past two decades due to their …

Conformational plasticity of parallel G-quadruplex─ implications on duplex–Quadruplex motifs

RKR Sannapureddi, MK Mohanty… - Journal of the …, 2023 - ACS Publications
DNA G-quadruplexes are essential motifs in molecular biology performing a wide range of
functions enabled by their unique and diverse structures. In this study, we focus on the …

Flipons and small RNAs accentuate the asymmetries of pervasive transcription by the reset and sequence-specific microcoding of promoter conformation

A Herbert - Journal of Biological Chemistry, 2023 - ASBMB
The role of alternate DNA conformations such as Z-DNA in the regulation of transcription is
currently underappreciated. These structures are encoded by sequences called flipons …

Structurally diverse G-quadruplexes as the noncanonical nucleic acid drug target for live cell imaging and antibacterial study

BX Zheng, J Yu, W Long, KH Chan… - Chemical …, 2023 - pubs.rsc.org
The formation of G-quadruplex structures (G4s) in vitro from guanine (G)-rich nucleic acid
sequences of DNA and RNA stabilized with monovalent cations, typically K+ and Na+, under …

G-Quadruplex DNA as a target in pathogenic bacteria: efficacy of an extended naphthalene diimide ligand and its mode of action

R Cebrián, E Belmonte-Reche, V Pirota… - Journal of medicinal …, 2021 - ACS Publications
Guanidine DNA quadruplex (G4-DNA) structures convey a distinctive layer of epigenetic
information that is critical for regulating key biological activities and processes as …

Structured waters mediate small molecule binding to G-quadruplex nucleic acids

S Neidle - Pharmaceuticals, 2021 - mdpi.com
The role of G-quadruplexes in human cancers is increasingly well-defined. Accordingly, G-
quadruplexes can be suitable drug targets and many small molecules have been identified …

Structure–Activity Study on Substituted, Core-Extended, and Dyad Naphthalene Diimide G-Quadruplex Ligands Leading to Potent Antitrypanosomal Agents

A Benassi, P Peñalver, M Pérez-Soto… - Journal of Medicinal …, 2024 - ACS Publications
Several G-quadruplex nucleic acid (G4s) ligands have been developed seeking target
selectivity in the past decade. Naphthalene diimide (NDI)-based compounds are particularly …

The intricate relationship of G-Quadruplexes and bacterial pathogenicity islands

B Lyu, Q Song - Elife, 2024 - elifesciences.org
The dynamic interplay between guanine-quadruplex (G4) structures and pathogenicity
islands (PAIs) represents a captivating area of research with implications for understanding …

Compensatory relationship between low-complexity regions and gene paralogy in the evolution of prokaryotes

E Persi, YI Wolf, S Karamycheva… - Proceedings of the …, 2023 - National Acad Sciences
The evolution of genomes in all life forms involves two distinct, dynamic types of genomic
changes: gene duplication (and loss) that shape families of paralogous genes and …