Predicting protein structures with a multiplayer online game

S Cooper, F Khatib, A Treuille, J Barbero, J Lee… - Nature, 2010 - nature.com
People exert large amounts of problem-solving effort playing computer games. Simple
image-and text-recognition tasks have been successfully 'crowd-sourced'through games 1 …

[HTML][HTML] Modern technologies of solution nuclear magnetic resonance spectroscopy for three-dimensional structure determination of proteins open avenues for life …

T Sugiki, N Kobayashi, T Fujiwara - Computational and structural …, 2017 - Elsevier
Nuclear magnetic resonance (NMR) spectroscopy is a powerful technique for structural
studies of chemical compounds and biomolecules such as DNA and proteins. Since the …

Recent advances in NMR protein structure prediction with ROSETTA

J Koehler Leman, G Künze - International Journal of Molecular Sciences, 2023 - mdpi.com
Nuclear magnetic resonance (NMR) spectroscopy is a powerful method for studying the
structure and dynamics of proteins in their native state. For high-resolution NMR structure …

Combined automated NOE assignment and structure calculation with CYANA

P Güntert, L Buchner - Journal of biomolecular NMR, 2015 - Springer
The automated assignment of NOESY cross peaks has become a fundamental technique for
NMR protein structure analysis. A widely used algorithm for this purpose is implemented in …

Structure of an intermediate state in protein folding and aggregation

P Neudecker, P Robustelli, A Cavalli, P Walsh… - Science, 2012 - science.org
Protein-folding intermediates have been implicated in amyloid fibril formation involved in
neurodegenerative disorders. However, the structural mechanisms by which intermediates …

[PDF][PDF] Data science at the singularity

D Donoho - Harvard Data Science Review, 2024 - assets.pubpub.org
Something fundamental to computation-based research has really changed in the last ten
years. In certain fields, progress is simply dramatically more rapid than previously …

Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data

EH Li, LE Spaman, R Tejero, YJ Huang… - Journal of Magnetic …, 2023 - Elsevier
Recent advances in molecular modeling of protein structures are changing the field of
structural biology. AlphaFold-2 (AF2), an AI system developed by DeepMind, Inc., utilizes …

Chemical shift-based methods in NMR structure determination

S Nerli, AC McShan, NG Sgourakis - Progress in nuclear magnetic …, 2018 - Elsevier
Chemical shifts are highly sensitive probes harnessed by NMR spectroscopists and
structural biologists as conformational parameters to characterize a range of biological …

CING: an integrated residue-based structure validation program suite

JF Doreleijers, AW Sousa da Silva, E Krieger… - Journal of biomolecular …, 2012 - Springer
We present a suite of programs, named CING for Common Interface for NMR Structure
Generation that provides for a residue-based, integrated validation of the structural NMR …

Protein NMR structures refined with Rosetta have higher accuracy relative to corresponding X-ray crystal structures

B Mao, R Tejero, D Baker… - Journal of the American …, 2014 - ACS Publications
We have found that refinement of protein NMR structures using Rosetta with experimental
NMR restraints yields more accurate protein NMR structures than those that have been …