Predicting protein structures with a multiplayer online game
People exert large amounts of problem-solving effort playing computer games. Simple
image-and text-recognition tasks have been successfully 'crowd-sourced'through games 1 …
image-and text-recognition tasks have been successfully 'crowd-sourced'through games 1 …
[HTML][HTML] Modern technologies of solution nuclear magnetic resonance spectroscopy for three-dimensional structure determination of proteins open avenues for life …
Nuclear magnetic resonance (NMR) spectroscopy is a powerful technique for structural
studies of chemical compounds and biomolecules such as DNA and proteins. Since the …
studies of chemical compounds and biomolecules such as DNA and proteins. Since the …
Recent advances in NMR protein structure prediction with ROSETTA
Nuclear magnetic resonance (NMR) spectroscopy is a powerful method for studying the
structure and dynamics of proteins in their native state. For high-resolution NMR structure …
structure and dynamics of proteins in their native state. For high-resolution NMR structure …
Combined automated NOE assignment and structure calculation with CYANA
P Güntert, L Buchner - Journal of biomolecular NMR, 2015 - Springer
The automated assignment of NOESY cross peaks has become a fundamental technique for
NMR protein structure analysis. A widely used algorithm for this purpose is implemented in …
NMR protein structure analysis. A widely used algorithm for this purpose is implemented in …
Structure of an intermediate state in protein folding and aggregation
Protein-folding intermediates have been implicated in amyloid fibril formation involved in
neurodegenerative disorders. However, the structural mechanisms by which intermediates …
neurodegenerative disorders. However, the structural mechanisms by which intermediates …
[PDF][PDF] Data science at the singularity
D Donoho - Harvard Data Science Review, 2024 - assets.pubpub.org
Something fundamental to computation-based research has really changed in the last ten
years. In certain fields, progress is simply dramatically more rapid than previously …
years. In certain fields, progress is simply dramatically more rapid than previously …
Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data
Recent advances in molecular modeling of protein structures are changing the field of
structural biology. AlphaFold-2 (AF2), an AI system developed by DeepMind, Inc., utilizes …
structural biology. AlphaFold-2 (AF2), an AI system developed by DeepMind, Inc., utilizes …
Chemical shift-based methods in NMR structure determination
Chemical shifts are highly sensitive probes harnessed by NMR spectroscopists and
structural biologists as conformational parameters to characterize a range of biological …
structural biologists as conformational parameters to characterize a range of biological …
CING: an integrated residue-based structure validation program suite
We present a suite of programs, named CING for Common Interface for NMR Structure
Generation that provides for a residue-based, integrated validation of the structural NMR …
Generation that provides for a residue-based, integrated validation of the structural NMR …
Protein NMR structures refined with Rosetta have higher accuracy relative to corresponding X-ray crystal structures
We have found that refinement of protein NMR structures using Rosetta with experimental
NMR restraints yields more accurate protein NMR structures than those that have been …
NMR restraints yields more accurate protein NMR structures than those that have been …