Toward kingdom-wide analyses of gene expression

I Julca, QW Tan, M Mutwil - Trends in Plant Science, 2023 - cell.com
Gene expression data for Archaeplastida are accumulating exponentially, with more than
300 000 RNA-sequencing (RNA-seq) experiments available for hundreds of species. The …

Understanding the Genetic Basis of C4 Kranz Anatomy with a View to Engineering C3 Crops

OV Sedelnikova, TE Hughes… - Annual review of …, 2018 - annualreviews.org
One of the most remarkable examples of convergent evolution is the transition from C3 to C4
photosynthesis, an event that occurred on over 60 independent occasions. The evolution of …

The Gynandropsis gynandra genome provides insights into whole-genome duplications and the evolution of C4 photosynthesis in Cleomaceae

NV Hoang, EOD Sogbohossou, W **ong… - The Plant …, 2023 - academic.oup.com
Gynandropsis gynandra (Cleomaceae) is a cosmopolitan leafy vegetable and medicinal
plant, which has also been used as a model to study C4 photosynthesis due to its …

Engineering C4 photosynthesis into C3 chassis in the synthetic biology age

ML Schuler, O Mantegazza, APM Weber - The Plant Journal, 2016 - Wiley Online Library
C4 photosynthetic plants outperform C3 plants in hot and arid climates. By concentrating
carbon dioxide around Rubisco C4 plants drastically reduce photorespiration. The …

The genome of Eleocharis vivipara elucidates the genetics of C3–C4 photosynthetic plasticity and karyotype evolution in the Cyperaceae

H Liu, H Zhao, Y Zhang, X Li, Y Zuo… - Journal of Integrative …, 2024 - Wiley Online Library
Eleocharis vivipara, an amphibious sedge in the Cyperaceae family, has several remarkable
properties, most notably its alternate use of C3 photosynthesis underwater and C4 …

Research strategies for single‐cell transcriptome analysis in plant leaves

Z Liu, X Yu, A Qin, Z Zhao, Y Liu, S Sun, H Liu… - The Plant …, 2022 - Wiley Online Library
The recent and continuous improvement in single‐cell RNA sequencing (scRNA‐seq)
technology has led to its emergence as an efficient experimental approach in plant research …

The Calvin-Benson-Bassham cycle in C4 and Crassulacean acid metabolism species

M Ludwig, J Hartwell, CA Raines, AJ Simkin - Seminars in cell & …, 2024 - Elsevier
Abstract The Calvin-Benson-Bassham (CBB) cycle is the ancestral CO 2 assimilation
pathway and is found in all photosynthetic organisms. Biochemical extensions to the CBB …

Photorespiration connects C3 and C4 photosynthesis

A Bräutigam, U Gowik - Journal of experimental botany, 2016 - academic.oup.com
C4 plants evolved independently more than 60 times from C3 ancestors. C4 photosynthesis
is a complex trait and its evolution from the ancestral C3 photosynthetic pathway involved …

Regulation and Evolution of C4 Photosynthesis

U Schlüter, APM Weber - Annual review of plant biology, 2020 - annualreviews.org
C4 photosynthesis evolved multiple times independently from ancestral C3 photosynthesis
in a broad range of flowering land plant families and in both monocots and dicots. The …

SynGAP: a synteny-based toolkit for gene structure annotation polishing

F Wu, Y Mai, C Chen, R **a - Genome Biology, 2024 - Springer
Genome sequencing has become a routine task for biologists, but the challenge of gene
structure annotation persists, impeding accurate genomic and genetic research. Here, we …