APEX fingerprinting reveals the subcellular localization of proteins of interest

SY Lee, MG Kang, JS Park, G Lee, AY Ting, HW Rhee - Cell reports, 2016 - cell.com
Deciphering the sub-compartmental location of a given protein of interest may help explain
its physiological function, but it can be challenging to do using optical or biochemical …

Membrane topology of transmembrane proteins: determinants and experimental tools

H Lee, H Kim - Biochemical and biophysical research communications, 2014 - Elsevier
Membrane topology refers to the two-dimensional structural information of a membrane
protein that indicates the number of transmembrane (TM) segments and the orientation of …

Protein Topology Prediction Algorithms Systematically Investigated in the Yeast Saccharomyces cerevisiae

U Weill, N Cohen, A Fadel, S Ben‐Dor… - …, 2019 - Wiley Online Library
Membrane proteins perform a variety of functions, all crucially dependent on their orientation
in the membrane. However, neither the exact number of transmembrane domains (TMDs) …

Cotranslational folding stimulates programmed ribosomal frameshifting in the alphavirus structural polyprotein

HR Harrington, MH Zimmer, LM Chamness… - Journal of Biological …, 2020 - jbc.org
Viruses maximize their genetic coding capacity through a variety of biochemical
mechanisms, including programmed ribosomal frameshifting (PRF), which facilitates the …

Sec62 protein mediates membrane insertion and orientation of moderately hydrophobic signal anchor proteins in the endoplasmic reticulum (ER)

JH Reithinger, JEH Kim, H Kim - Journal of Biological Chemistry, 2013 - jbc.org
Nascent chains are known to be targeted to the endoplasmic reticulum membrane either by
a signal recognition particle (SRP)-dependent co-translational or by an SRP-independent …

Yeast Fex1p is a constitutively expressed fluoride channel with functional asymmetry of its two homologous domains

KD Smith, PB Gordon, A Rivetta, KE Allen… - Journal of Biological …, 2015 - jbc.org
Fluoride is a ubiquitous environmental toxin with which all biological species must cope. A
recently discovered family of fluoride export (FEX) proteins protects organisms from fluoride …

[HTML][HTML] Experimental and computational approaches for membrane protein insertion and topology determination

G Duart, R Graña-Montes, N Pastor-Cantizano… - Methods, 2024 - Elsevier
Membrane proteins play pivotal roles in a wide array of cellular processes and constitute
approximately a quarter of the protein-coding genes across all organisms. Despite their …

Topology of Endoplasmic Reticulum‐Associated Cellular and Viral Proteins Determined with Split‐GFP

SI Hyun, L Maruri‐Avidal, B Moss - Traffic, 2015 - Wiley Online Library
The split green fluorescent protein (GFP) system was adapted for investigation of the
topology of ER‐associated proteins. A 215‐amino acid fragment of GFP (S1–10) was …

[HTML][HTML] Membrane insertion and topology of the translocon-associated protein (TRAP) gamma subunit

M Bañó-Polo, CA Martínez-Garay, B Grau… - … et Biophysica Acta (BBA …, 2017 - Elsevier
Translocon-associated protein (TRAP) complex is intimately associated with the ER
translocon for the insertion or translocation of newly synthesised proteins in eukaryotic cells …

[HTML][HTML] Determination of the topology of endoplasmic reticulum membrane proteins using redox-sensitive green-fluorescence protein fusions

M Tsachaki, J Birk, A Egert, A Odermatt - Biochimica et Biophysica Acta …, 2015 - Elsevier
Membrane proteins of the endoplasmic reticulum (ER) are involved in a wide array of
essential cellular functions. Identification of the topology of membrane proteins can provide …