[HTML][HTML] Combinatorial optimization problems and metaheuristics: Review, challenges, design, and development

F Peres, M Castelli - Applied Sciences, 2021 - mdpi.com
In the past few decades, metaheuristics have demonstrated their suitability in addressing
complex problems over different domains. This success drives the scientific community …

Systems biology primer: the basic methods and approaches

I Tavassoly, J Goldfarb, R Iyengar - Essays in biochemistry, 2018 - portlandpress.com
Systems biology is an integrative discipline connecting the molecular components within a
single biological scale and also among different scales (eg cells, tissues and organ systems) …

Systems biology informed deep learning for inferring parameters and hidden dynamics

A Yazdani, L Lu, M Raissi… - PLoS computational …, 2020 - journals.plos.org
Mathematical models of biological reactions at the system-level lead to a set of ordinary
differential equations with many unknown parameters that need to be inferred using …

Quantitative and logic modelling of molecular and gene networks

N Le Novere - Nature Reviews Genetics, 2015 - nature.com
Behaviours of complex biomolecular systems are often irreducible to the elementary
properties of their individual components. Explanatory and predictive mathematical models …

The DIRECT algorithm: 25 years Later

DR Jones, JRRA Martins - Journal of global optimization, 2021 - Springer
Introduced in 1993, the DIRECT global optimization algorithm provided a fresh approach to
minimizing a black-box function subject to lower and upper bounds on the variables. In …

Review of performance optimization techniques applied to wind turbines

A Chehouri, R Younes, A Ilinca, J Perron - Applied Energy, 2015 - Elsevier
This paper presents a review of the optimization techniques and strategies applied to wind
turbine performance optimization. The topic is addressed by identifying the most significant …

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

T Toni, D Welch, N Strelkowa… - Journal of the …, 2009 - royalsocietypublishing.org
Approximate Bayesian computation (ABC) methods can be used to evaluate posterior
distributions without having to calculate likelihoods. In this paper, we discuss and apply an …

Global optimization advances in mixed-integer nonlinear programming, MINLP, and constrained derivative-free optimization, CDFO

F Boukouvala, R Misener, CA Floudas - European Journal of Operational …, 2016 - Elsevier
This manuscript reviews recent advances in deterministic global optimization for Mixed-
Integer Nonlinear Programming (MINLP), as well as Constrained Derivative-Free …

[HTML][HTML] Comprehensive data analysis of femtosecond transient absorption spectra: A review

C Ruckebusch, M Sliwa, P Pernot, A De Juan… - … of Photochemistry and …, 2012 - Elsevier
Nowadays, time-resolved spectroscopy data can be routinely and accurately collected in UV–
vis femtosecond transient absorption spectroscopy. However, the data analysis strategy and …

Gene regulatory network inference: data integration in dynamic models—a review

M Hecker, S Lambeck, S Toepfer, E Van Someren… - Biosystems, 2009 - Elsevier
Systems biology aims to develop mathematical models of biological systems by integrating
experimental and theoretical techniques. During the last decade, many systems biological …