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[HTML][HTML] Combinatorial optimization problems and metaheuristics: Review, challenges, design, and development
In the past few decades, metaheuristics have demonstrated their suitability in addressing
complex problems over different domains. This success drives the scientific community …
complex problems over different domains. This success drives the scientific community …
Systems biology primer: the basic methods and approaches
I Tavassoly, J Goldfarb, R Iyengar - Essays in biochemistry, 2018 - portlandpress.com
Systems biology is an integrative discipline connecting the molecular components within a
single biological scale and also among different scales (eg cells, tissues and organ systems) …
single biological scale and also among different scales (eg cells, tissues and organ systems) …
Systems biology informed deep learning for inferring parameters and hidden dynamics
A Yazdani, L Lu, M Raissi… - PLoS computational …, 2020 - journals.plos.org
Mathematical models of biological reactions at the system-level lead to a set of ordinary
differential equations with many unknown parameters that need to be inferred using …
differential equations with many unknown parameters that need to be inferred using …
Quantitative and logic modelling of molecular and gene networks
N Le Novere - Nature Reviews Genetics, 2015 - nature.com
Behaviours of complex biomolecular systems are often irreducible to the elementary
properties of their individual components. Explanatory and predictive mathematical models …
properties of their individual components. Explanatory and predictive mathematical models …
The DIRECT algorithm: 25 years Later
DR Jones, JRRA Martins - Journal of global optimization, 2021 - Springer
Introduced in 1993, the DIRECT global optimization algorithm provided a fresh approach to
minimizing a black-box function subject to lower and upper bounds on the variables. In …
minimizing a black-box function subject to lower and upper bounds on the variables. In …
Review of performance optimization techniques applied to wind turbines
This paper presents a review of the optimization techniques and strategies applied to wind
turbine performance optimization. The topic is addressed by identifying the most significant …
turbine performance optimization. The topic is addressed by identifying the most significant …
Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
Approximate Bayesian computation (ABC) methods can be used to evaluate posterior
distributions without having to calculate likelihoods. In this paper, we discuss and apply an …
distributions without having to calculate likelihoods. In this paper, we discuss and apply an …
Global optimization advances in mixed-integer nonlinear programming, MINLP, and constrained derivative-free optimization, CDFO
This manuscript reviews recent advances in deterministic global optimization for Mixed-
Integer Nonlinear Programming (MINLP), as well as Constrained Derivative-Free …
Integer Nonlinear Programming (MINLP), as well as Constrained Derivative-Free …
[HTML][HTML] Comprehensive data analysis of femtosecond transient absorption spectra: A review
Nowadays, time-resolved spectroscopy data can be routinely and accurately collected in UV–
vis femtosecond transient absorption spectroscopy. However, the data analysis strategy and …
vis femtosecond transient absorption spectroscopy. However, the data analysis strategy and …
Gene regulatory network inference: data integration in dynamic models—a review
Systems biology aims to develop mathematical models of biological systems by integrating
experimental and theoretical techniques. During the last decade, many systems biological …
experimental and theoretical techniques. During the last decade, many systems biological …