The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …

Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Abstract The Pharmacogenomics Knowledge Base, PharmGKB, is an interactive tool for
researchers investigating how genetic variation affects drug response. The PharmGKB Web …

This article reviews recent advances in applying natural language processing (NLP) to
Electronic Health Records (EHRs) for computational phenoty**. NLP-based …

Motivation: Widespread availability of low-cost, full genome sequencing will introduce new
challenges for bioinformatics. Results: This review outlines recent developments in …

We proposed the first models based on recurrent neural networks (more specifically Long
Short-Term Memory-LSTM) for classifying relations from clinical notes. We tested our models …

In response to the unbridled growth of information in literature and biomedical databases,
researchers require efficient means of handling and extracting information. As well as …

Motivation The biomedical community's collective understanding of how chemicals, genes
and phenotypes interact is distributed across the text of over 24 million research articles …

The diagnosis of Mendelian disorders requires labor-intensive literature research. Trained
clinicians can spend hours looking for the right publication (s) supporting a single gene that …

Abstract The Pharmacogenomics Knowledgebase (PharmGKB) is an integrated online
knowledge resource for the understanding of how genetic variation contributes to variation …