A brief history of synthetic biology

DE Cameron, CJ Bashor, JJ Collins - Nature Reviews Microbiology, 2014 - nature.com
The ability to rationally engineer microorganisms has been a long-envisioned goal dating
back more than a half-century. With the genomics revolution and rise of systems biology in …

Large-scale de novo DNA synthesis: technologies and applications

S Kosuri, GM Church - Nature methods, 2014 - nature.com
For over 60 years, the synthetic production of new DNA sequences has helped researchers
understand and engineer biology. Here we summarize methods and caveats for the de novo …

Principles of genetic circuit design

JAN Brophy, CA Voigt - Nature methods, 2014 - nature.com
Cells navigate environments, communicate and build complex patterns by initiating gene
expression in response to specific signals. Engineers seek to harness this capability to …

Control of nitrogen fixation in bacteria that associate with cereals

MH Ryu, J Zhang, T Toth, D Khokhani, BA Geddes… - Nature …, 2020 - nature.com
Legumes obtain nitrogen from air through rhizobia residing in root nodules. Some species of
rhizobia can colonize cereals but do not fix nitrogen on them. Disabling native regulation …

Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli

G Cambray, JC Guimaraes, AP Arkin - Nature biotechnology, 2018 - nature.com
Comparative analyses of natural and mutated sequences have been used to probe
mechanisms of gene expression, but small sample sizes may produce biased outcomes. We …

Characterization of 582 natural and synthetic terminators and quantification of their design constraints

YJ Chen, P Liu, AAK Nielsen, JAN Brophy, K Clancy… - Nature …, 2013 - nature.com
Large genetic engineering projects require more cistrons and consequently more strong and
reliable transcriptional terminators. We have measured the strengths of a library of …

Mechanism of transcriptional bursting in bacteria

S Chong, C Chen, H Ge, XS **e - Cell, 2014 - cell.com
Transcription of highly expressed genes has been shown to occur in stochastic bursts. But
the origin of such ubiquitous phenomenon has not been understood. Here, we present the …

Automated design of thousands of nonrepetitive parts for engineering stable genetic systems

A Hossain, E Lopez, SM Halper, DP Cetnar… - Nature …, 2020 - nature.com
Engineered genetic systems are prone to failure when their genetic parts contain repetitive
sequences. Designing many nonrepetitive genetic parts with desired functionalities remains …

Evolutionary convergence of pathway-specific enzyme expression stoichiometry

JB Lalanne, JC Taggart, MS Guo, L Herzel, A Schieler… - Cell, 2018 - cell.com
Coexpression of proteins in response to pathway-inducing signals is the founding paradigm
of gene regulation. However, it remains unexplored whether the relative abundance of co …

Biotechnological applications of Yarrowia lipolytica: past, present and future

HH Liu, XJ Ji, H Huang - Biotechnology Advances, 2015 - Elsevier
Non-conventional yeasts have attracted increasing interest due to their biochemical
characteristics and potential applications. Yarrowia lipolytica is a non-conventional yeast …