Analyzing and modeling real-world phenomena with complex networks: a survey of applications

LF Costa, ON Oliveira Jr, G Travieso… - Advances in …, 2011 - Taylor & Francis
The success of new scientific areas can be assessed by their potential in contributing to new
theoretical approaches and in applications to real-world problems. Complex networks have …

Clique graphs and overlap** communities

TS Evans - Journal of Statistical Mechanics: Theory and …, 2010 - iopscience.iop.org
It is shown how to construct a clique graph in which properties of cliques of a fixed order in a
given graph are represented by vertices in a weighted graph. Various definitions and …

Map** drug-target interactions and synergy in multi-molecular therapeutics for pressure-overload cardiac hypertrophy

A Rai, V Kumar, G Jerath, CC Kartha… - NPJ systems biology …, 2021 - nature.com
Advancements in systems biology have resulted in the development of network
pharmacology, leading to a paradigm shift from “one-target, one-drug” to “target-network …

[PDF][PDF] Dynamic network evolution: Models, clustering, anomaly detection

CC Bilgin, B Yener - IEEE Networks, 2006 - cs.rpi.edu
Traditionally, research on graph theory focused on studying graphs that are static. However,
almost all real networks are dynamic in nature and large in size. Quite recently, research …

Correlation between structure and temperature in prokaryotic metabolic networks

K Takemoto, JC Nacher, T Akutsu - BMC bioinformatics, 2007 - Springer
Background In recent years, an extensive characterization of network structures has been
made in an effort to elucidate design principles of metabolic networks, providing valuable …

Generating complex networks through a vertex merging mechanism: Empirical and analytical analysis

S Sidorov, S Mironov, TD Emelianov - Physica A: Statistical Mechanics and …, 2025 - Elsevier
One of the most well-known mechanisms contributing to the emergence of networks with a
power-law degree distribution is preferential attachment. In this study, we examined a family …

Weighted evolving networks with self-organized communities

X Zhou, L **ang, W **ao-Fan - Communications in Theoretical …, 2008 - iopscience.iop.org
In order to describe the self-organization of communities in the evolution of weighted
networks, we propose a new evolving model for weighted community-structured networks …

Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity

K Takemoto, C Oosawa - Mathematical biosciences, 2007 - Elsevier
We propose a growing network model that consists of two tunable mechanisms: growth by
merging modules which are represented as complete graphs and a fitness-driven …

Structure of n-clique networks embedded in a complex network

K Takemoto, C Oosawa, T Akutsu - Physica A: Statistical Mechanics and its …, 2007 - Elsevier
We propose the n-clique network as a powerful tool for understanding global structures of
combined highly-interconnected subgraphs, and provide theoretical predictions for statistical …

Emergence of modularity and disassortativity in protein-protein interaction networks

X Wan, S Cai, J Zhou, Z Liu - Chaos: An Interdisciplinary Journal of …, 2010 - pubs.aip.org
In this paper, we present a simple evolution model of protein-protein interaction networks by
introducing a rule of small-preference duplication of a node, meaning that the probability of a …