High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives

MM Nizamani, Q Zhang, G Muhae-Ud-Din… - Phytopathology …, 2023 - Springer
High-throughput sequencing (HTS) has instigated a paradigm shift in plant pathology,
showcasing its transformative role in the management of plant diseases. As a powerful tool …

The application of metagenomics to study microbial communities and develop desirable traits in fermented foods

M Srinivas, O O'Sullivan, PD Cotter, D Sinderen… - Foods, 2022 - mdpi.com
The microbial communities present within fermented foods are diverse and dynamic,
producing a variety of metabolites responsible for the fermentation processes, imparting …

Emerging strategies and therapeutic innovations for combating drug resistance in Staphylococcus aureus strains: A comprehensive review

M Gopikrishnan, S Haryini - Journal of Basic Microbiology, 2024 - Wiley Online Library
In recent years, antibiotic therapy has encountered significant challenges due to the rapid
emergence of multidrug resistance among bacteria responsible for life‐threatening …

Metagenomic analysis revealed highly diverse carbon fixation microorganisms in a petroleum-hydrocarbon-contaminated aquifer

Z Ning, P Cai, M Zhang - Environmental Research, 2024 - Elsevier
As one of the ultimate products of hydrocarbon biodegradation, inorganic carbon always be
used to evaluate hydrocarbon biodegradation rates in petroleum-hydrocarbon-contaminated …

Cas12a/Guide RNA-based platforms for rapidly and accurately identifying Staphylococcus aureus and methicillin-resistant S. aureus

X Cao, Y Chang, C Tao, S Chen, Q Lin… - Microbiology …, 2023 - Am Soc Microbiol
In order to ensure the prevention and control of methicillin-resistant Staphylococcus aureus
(MRSA) infection, rapid and accurate detection of pathogens and their resistance …

Respiratory viruses affecting health and performance in equine athletes

T Frippiat, L van den Wollenberg… - Virology, 2024 - Elsevier
Several respiratory viruses can affect equine athletes, with acute respiratory signs resulting
in a reduced ability to perform. The direct link between respiratory viruses and performance …

Diagnosis and genomic characterization of the largest western equine encephalitis virus outbreak in Uruguay during 2023–2024

G Tomás, A Marandino, S Rodríguez, GL Wallau… - npj Viruses, 2024 - nature.com
The Western equine encephalitis virus is transmitted between mosquitoes and wild birds.
Mosquitoes spread the virus to horses and human populations, causing severe encephalitis …

The TiHoCL panel for canine lymphoma: a feasibility study integrating functional genomics and network biology approaches for comparative oncology targeted NGS …

S Fibi-Smetana, C Inglis, D Schuster… - Frontiers in veterinary …, 2023 - frontiersin.org
Targeted next-generation sequencing (NGS) enables the identification of genomic variants
in cancer patients with high sensitivity at relatively low costs, and has thus opened the era to …

Deep sequencing of porcine reproductive and respiratory syndrome virus ORF7: a promising tool for diagnostics and epidemiologic surveillance

S Jakab, K Bali, C Freytag, A Pataki, E Fehér, M Halas… - Animals, 2023 - mdpi.com
Simple Summary Porcine reproductive and respiratory syndrome is a viral disease that
causes significant economic losses in many countries worldwide. In this study, we employed …

The innovative informatics approaches of high-throughput technologies in livestock: spearheading the sustainability and resiliency of agrigenomics research

GGD Suminda, M Ghosh, YO Son - Life, 2022 - mdpi.com
For more than a decade, next-generation sequencing (NGS) has been emerging as the
mainstay of agrigenomics research. High-throughput technologies have made it feasible to …