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Rearrangement distance problems: An updated survey
One of the challenges in the Comparative Genomics field is to infer how close two
organisms are based on the similarities and differences between their genetic materials …
organisms are based on the similarities and differences between their genetic materials …
Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions
The rearrangement distance is a method to compare genomes of different species. Such
distance is the number of rearrangement events necessary to transform one genome into …
distance is the number of rearrangement events necessary to transform one genome into …
An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes
Background In the comparative genomics field, one of the goals is to estimate a sequence of
genetic changes capable of transforming a genome into another. Genome rearrangement …
genetic changes capable of transforming a genome into another. Genome rearrangement …
Reversal and indel distance with intergenic region information
Recent works on genome rearrangements have shown that incorporating intergenic region
information along with gene order in models provides better estimations for the …
information along with gene order in models provides better estimations for the …
Genome rearrangement distance with a flexible intergenic regions aspect
Most mathematical models for genome rearrangement problems have considered only gene
order. In this way, the rearrangement distance considering some set of events, such as …
order. In this way, the rearrangement distance considering some set of events, such as …
[PDF][PDF] Signed rearrangement distances considering repeated genes and intergenic regions
Genome Rearrangement distance problems are used to infer the evolutionary distance
between genomes. These problems look at the number of mutations called rearrangement …
between genomes. These problems look at the number of mutations called rearrangement …
Signed rearrangement distances considering repeated genes, intergenic regions, and indels
Genome rearrangement distance problems allow to estimate the evolutionary distance
between genomes. These problems aim to compute the minimum number of mutations …
between genomes. These problems aim to compute the minimum number of mutations …
A new approach for the reversal distance with indels and moves in intergenic regions
Genome rearrangement events are widely used to estimate a minimum-size sequence of
mutations capable of transforming a genome into another. The length of this sequence is …
mutations capable of transforming a genome into another. The length of this sequence is …
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information
The most common way to calculate the rearrangement distance between two genomes is to
use the size of a minimum length sequence of rearrangements that transforms one of the two …
use the size of a minimum length sequence of rearrangements that transforms one of the two …
Transposition distance considering intergenic regions for unbalanced genomes
In seminal works of genome rearrangements, the distance between two genomes is
measured by the minimum number of rearrangements (eg, reversals, transpositions, DCJs …
measured by the minimum number of rearrangements (eg, reversals, transpositions, DCJs …