[HTML][HTML] Inference of epidemic dynamics in the COVID-19 era and beyond

A Cori, A Kucharski - Epidemics, 2024 - Elsevier
The COVID-19 pandemic demonstrated the key role that epidemiology and modelling play
in analysing infectious threats and supporting decision making in real-time. Motivated by the …

COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses

Z Chen, JLH Tsui, B Gutierrez, S Busch Moreno… - Science, 2024 - science.org
The global dynamics of seasonal influenza viruses inform the design of surveillance,
intervention, and vaccination strategies. The COVID-19 pandemic provided a singular …

Modeling zoonotic and vector-borne viruses

SD Judson, DW Dowdy - Current Opinion in Virology, 2024 - Elsevier
Highlights●Goals for models include understanding, decision-making, and
predicting/forecasting.●Data for models vary in multiple dimensions, including spatial …

Increasing evolution, prevalence, and outbreaks for rift valley fever virus in the process of breaking geographical barriers

Z Wang, S Pei, R Ye, J Chen, N Cheng, M Zhao… - Science of The Total …, 2024 - Elsevier
Background Rift valley fever (RVF) is listed as one of prioritized diseases by WHO. This
study aims to describe RVF virus' landscape distribution globally, and to insight dynamics …

Demystifying Monte Carlo methods in R: A guide from Metropolis–Hastings to Hamiltonian Monte Carlo with biological growth equation examples

DV Mestry, AR Bhowmick - Ecological Modelling, 2025 - Elsevier
Abstract Hamiltonian Monte Carlo (HMC) has emerged as a cutting-edge and versatile
Markov Chain Monte Carlo (MCMC) method, widely adopted across various disciplines due …

A secure visualization platform for pathogenic genome analysis with an accurate reference database

G Fan, C Guo, Q Zhang, D Liu, Q Sun, Z Cui… - Biosafety and …, 2024 - mednexus.org
Investigating the genetic and developmental characteristics, infection transmission
attributes, and epidemiological trends of pathogens using genomic data represents the …

Effective use of models in intelligence-to-decision workflows within and across One Health sectors

K Pepin, K Carlisle, R Chipman, D Cole, D Anderson… - 2024 - researchsquare.com
Decision-makers in public service face uncertainty. Operational management or policy
decisions need to be made about system-level ecological and sociological processes that …

[HTML][HTML] Genomic surveillance as a scalable framework for precision phage therapy against antibiotic-resistant pathogens

M Koncz, T Stirling, HH Mehdi, O Méhi, B Eszenyi… - Cell, 2024 - cell.com
Phage therapy is gaining increasing interest in the fight against critically antibiotic-resistant
nosocomial pathogens. However, the narrow host range of bacteriophages hampers the …

A Mosquito's Guide to Viral Emergence: Unveiling Mosquito-Borne Virus Transmission Dynamics, Vector Competence, and Genetic Evolution

J Krambrich - 2024 - diva-portal.org
A Mosquito's Guide to Viral Emergence Page 1 Digital Comprehensive Summaries of Uppsala
Dissertations from the Faculty of Medicine 2040 A Mosquito's Guide to Viral Emergence …

The genomic epidemiology of antimicrobial resistant sexually transmissible shigellosis

L Mason - 2025 - livrepository.liverpool.ac.uk
Shigella spp. cause shigellosis, a gastrointestinal illness characterised by severe diarrhoea.
Sexually transmissible Shigella species (spp.) are becoming more frequently transmitted …