A brief survey of machine learning methods in protein sub-Golgi localization
Background: The location of proteins in a cell can provide important clues to their functions
in various biological processes. Thus, the application of machine learning method in the …
in various biological processes. Thus, the application of machine learning method in the …
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
CRISPR (clustered regularly interspaced short palindromic repeats) arrays and their
associated (Cas) proteins confer bacteria and archaea adaptive immunity against …
associated (Cas) proteins confer bacteria and archaea adaptive immunity against …
CRISPR-based approaches for gene regulation in non-model bacteria
SN Call, LB Andrews - Frontiers in genome editing, 2022 - frontiersin.org
CRISPR interference (CRISPRi) and CRISPR activation (CRISPRa) have become
ubiquitous approaches to control gene expression in bacteria due to their simple design and …
ubiquitous approaches to control gene expression in bacteria due to their simple design and …
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of …
Abstract In Archaea and Bacteria, the arrays called CRISPRs for 'clustered regularly
interspaced short palindromic repeats' and the CRISPR associated genes or cas provide …
interspaced short palindromic repeats' and the CRISPR associated genes or cas provide …
Genomic analysis of molecular bacterial mechanisms of resistance to phage infection
To optimize phage therapy, we need to understand how bacteria evolve against phage
attacks. One of the main problems of phage therapy is the appearance of bacterial …
attacks. One of the main problems of phage therapy is the appearance of bacterial …
CRISPRMatch: an automatic calculation and visualization tool for high-throughput CRISPR genome-editing data analysis
Custom-designed nucleases, including CRISPR-Cas9 and CRISPR-Cpf1, are widely used
to realize the precise genome editing. The high-coverage, low-cost and quantifiability make …
to realize the precise genome editing. The high-coverage, low-cost and quantifiability make …
Recent advances in conotoxin classification by using machine learning methods
Conotoxins are disulfide-rich small peptides, which are invaluable peptides that target ion
channel and neuronal receptors. Conotoxins have been demonstrated as potent …
channel and neuronal receptors. Conotoxins have been demonstrated as potent …
CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
VA Padilha, OS Alkhnbashi, SA Shah… - …, 2020 - academic.oup.com
Background CRISPR-Cas genes are extraordinarily diverse and evolve rapidly when
compared to other prokaryotic genes. With the rapid increase in newly sequenced archaeal …
compared to other prokaryotic genes. With the rapid increase in newly sequenced archaeal …
Genome editing and bioinformatics
Bioinformatics has become an indispensable technology in molecular biology for genome
editing. In this review, we outline various bioinformatic techniques necessary for genome …
editing. In this review, we outline various bioinformatic techniques necessary for genome …
A common whole-genome paleotetraploidization in Cucurbitales
J Wang, M Yuan, Y Feng, Y Zhang, S Bao… - Plant …, 2022 - academic.oup.com
Cucurbitales are an important order of flowering plants known for encompassing edible
plants of economic and medicinal value and numerous ornamental plants of horticultural …
plants of economic and medicinal value and numerous ornamental plants of horticultural …