A guide to interrogating immunometabolism

K Voss, HS Hong, JE Bader, A Sugiura… - Nature Reviews …, 2021 - nature.com
The metabolic charts memorized in early biochemistry courses, and then later forgotten,
have come back to haunt many immunologists with new recognition of the importance of …

Genome-scale modeling identifies dynamic metabolic vulnerabilities during the epithelial to mesenchymal transition

R Bhowmick, S Campit, SK Katkam… - Communications …, 2024 - nature.com
Epithelial-to-mesenchymal transition (EMT) is a conserved cellular process critical for
embryogenesis, wound healing, and cancer metastasis. During EMT, cells undergo large …

Common alterations in plasma free amino acid profiles and gut microbiota-derived tryptophan metabolites of five types of cancer patients

A Hussain, L **e, G Deng, X Kang - Amino Acids, 2023 - Springer
Amino acids not only play a vital role in the synthesis of biological molecules such as
proteins in cancer malignant cells, they are also essential metabolites for immune cell …

Nutrient sensing by histone marks: reading the metabolic histone code using tracing, omics, and modeling

SE Campit, A Meliki, NA Youngson… - …, 2020 - Wiley Online Library
Several metabolites serve as substrates for histone modifications and communicate
changes in the metabolic environment to the epigenome. Technologies such as …

Glutaminolysis dynamics during astrocytoma progression correlates with tumor aggressiveness

YE Moreira Franco, MJ Alves, M Uno, IF Moretti… - Cancer & …, 2021 - Springer
Background Glioblastoma is the most frequent and high-grade adult malignant central
nervous system tumor. The prognosis is still poor despite the use of combined therapy …

Metabolic stratification of human breast tumors reveal subtypes of clinical and therapeutic relevance

MA Iqbal, S Siddiqui, K Smith, P Singh, B Kumar… - Iscience, 2023 - cell.com
Extensive metabolic heterogeneity in breast cancers has limited the deployment of
metabolic therapies. To enable patient stratification, we studied the metabolic landscape in …

Comparative sera proteomics analysis of differentially expressed proteins in oral squamous cell carcinoma

YL Wong, A Ramanathan, KM Yuen, WMW Mustafa… - PeerJ, 2021 - peerj.com
Background Oral squamous cell carcinoma (OSCC) has increased in incidence from 1990 to
2017, especially in South and Southeast Asia. It is often diagnosed at an advanced stage …

Probing altered enzyme activity in the biochemical characterization of cancer

MAA Adam, CD Sohl - Bioscience Reports, 2022 - portlandpress.com
Enzymes have evolved to catalyze their precise reactions at the necessary rates, locations,
and time to facilitate our development, to respond to a variety of insults and challenges, and …

The axes of life: a roadmap for understanding dynamic multiscale systems

S Chandrasekaran, N Danos, UZ George… - Integrative and …, 2021 - academic.oup.com
The biological challenges facing humanity are complex, multi-factorial, and are intimately
tied to the future of our health, welfare, and stewardship of the Earth. Tackling problems in …

Constraint-based modeling identifies metabolic vulnerabilities during the epithelial to mesenchymal transition

S Campit, VG Keshamouni, S Chandrasekaran - bioRxiv, 2022 - biorxiv.org
Epithelial-to-mesenchymal transition (EMT) is a developmentally conserved cellular process
critical for tumor metastasis. EMT enables malignant epithelial cells to acquire mesenchymal …