What is speciation genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species

CR Campbell, JW Poelstra… - Biological Journal of the …, 2018 - academic.oup.com
As is true of virtually every realm of the biological sciences, our understanding of speciation
is increasingly informed by the genomic revolution of the past decade. Investigators can ask …

Sympatric speciation in the genomic era

AD Foote - Trends in ecology & evolution, 2018 - cell.com
Sympatric speciation has been of key interest to biologists investigating how natural and
sexual selection drive speciation without the confounding variable of geographic isolation …

Deriving genotypes from RAD-seq short-read data using Stacks

NC Rochette, JM Catchen - Nature protocols, 2017 - nature.com
Restriction site-associated DNA sequencing (RAD-seq) allows for the genome-wide
discovery and genoty** of single-nucleotide polymorphisms in hundreds of individuals at …

Contrasting signatures of genomic divergence during sympatric speciation

AF Kautt, CF Kratochwil, A Nater… - Nature, 2020 - nature.com
The transition from 'well-marked varieties' of a single species into 'well-defined species'—
especially in the absence of geographic barriers to gene flow (sympatric speciation)—has …

Understanding natural selection and similarity: Convergent, parallel and repeated evolution

J Cerca - Molecular Ecology, 2023 - Wiley Online Library
Parallel and convergent evolution offer some of the most compelling evidence for the
significance of natural selection in evolution, as the emergence of similar adaptive solutions …

RNA sequencing provides insights into the evolution of lettuce and the regulation of flavonoid biosynthesis

L Zhang, W Su, R Tao, W Zhang, J Chen, P Wu… - Nature …, 2017 - nature.com
Different horticultural types of lettuce exhibit tremendous morphological variation. However,
the molecular basis for domestication and divergence among the different horticultural types …

Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish

A Jacobs, M Carruthers, A Yurchenko… - PLoS …, 2020 - journals.plos.org
Understanding the extent to which ecological divergence is repeatable is essential for
predicting responses of biodiversity to environmental change. Here we test the predictability …

Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes

EJ Richards, CH Martin - PLoS genetics, 2017 - journals.plos.org
Rapid diversification often involves complex histories of gene flow that leave variable and
conflicting signatures of evolutionary relatedness across the genome. Identifying the extent …

Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

C Rougeux, L Bernatchez… - Genome biology and …, 2017 - academic.oup.com
Parallel divergence across replicated species pairs occurring in similar environmental
contrasts may arise through distinct evolutionary scenarios. Deciphering whether such …

Searching for sympatric speciation in the genomic era

EJ Richards, MR Servedio, CH Martin - BioEssays, 2019 - Wiley Online Library
Sympatric speciation illustrates how natural and sexual selection may create new species in
isolation without geographic barriers. However, recent genomic reanalyses of classic …