[HTML][HTML] Nature, nurture, or chance: stochastic gene expression and its consequences

A Raj, A Van Oudenaarden - Cell, 2008 - cell.com
Gene expression is a fundamentally stochastic process, with randomness in transcription
and translation leading to cell-to-cell variations in mRNA and protein levels. This variation …

The second wave of synthetic biology: from modules to systems

PEM Purnick, R Weiss - Nature reviews Molecular cell biology, 2009 - nature.com
Synthetic biology is a research field that combines the investigative nature of biology with
the constructive nature of engineering. Efforts in synthetic biology have largely focused on …

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

E Sharon, Y Kalma, A Sharp, T Raveh-Sadka… - Nature …, 2012 - nature.com
Despite extensive research, our understanding of the rules according to which cis-regulatory
sequences are converted into gene expression is limited. We devised a method for …

Bistability, epigenetics, and bet-hedging in bacteria

JW Veening, WK Smits, OP Kuipers - Annu. Rev. Microbiol., 2008 - annualreviews.org
Clonal populations of microbial cells often show a high degree of phenotypic variability
under homogeneous conditions. Stochastic fluctuations in the cellular components that …

[HTML][HTML] A synthetic biology framework for programming eukaryotic transcription functions

AS Khalil, TK Lu, CJ Bashor, CL Ramirez, NC Pyenson… - Cell, 2012 - cell.com
Eukaryotic transcription factors (TFs) perform complex and combinatorial functions within
transcriptional networks. Here, we present a synthetic framework for systematically …

Promoter engineering: recent advances in controlling transcription at the most fundamental level

J Blazeck, HS Alper - Biotechnology journal, 2013 - Wiley Online Library
Synthetic control of gene expression is critical for metabolic engineering efforts. Specifically,
precise control of key pathway enzymes (heterologous or native) can help maximize product …

Controlling promoter strength and regulation in Saccharomyces cerevisiae using synthetic hybrid promoters

J Blazeck, R Garg, B Reed… - Biotechnology and …, 2012 - Wiley Online Library
A dynamic range of well‐controlled constitutive and tunable promoters are essential for
metabolic engineering and synthetic biology applications in all host organisms. Here, we …

Diversity-based, model-guided construction of synthetic gene networks with predicted functions

T Ellis, X Wang, JJ Collins - Nature biotechnology, 2009 - nature.com
Engineering artificial gene networks from modular components is a major goal of synthetic
biology. However, the construction of gene networks with predictable functions remains …

Introduction and expression of genes for metabolic engineering applications in Saccharomyces cerevisiae

NA Da Silva, S Srikrishnan - FEMS yeast research, 2012 - academic.oup.com
Metabolic pathway engineering in the yeast Saccharomyces cerevisiae leads to improved
production of a wide range of compounds, ranging from ethanol (from biomass) to natural …

The role of physiological heterogeneity in microbial population behavior

ME Lidstrom, MC Konopka - Nature chemical biology, 2010 - nature.com
As the ability to analyze individual cells in microbial populations expands, it is becoming
apparent that isogenic microbial populations contain substantial cell-to-cell differences in …