Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Whole-genome duplication and plant macroevolution

JW Clark, PCJ Donoghue - Trends in plant science, 2018 - cell.com
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in …

Y Zhao, R Zhang, KW Jiang, J Qi, Y Hu, J Guo, R Zhu… - Molecular plant, 2021 - cell.com
Fabaceae are the third largest angiosperm family, with 765 genera and∼ 19 500 species.
They are important both economically and ecologically, and global Fabaceae crops are …

[HTML][HTML] The water lily genome and the early evolution of flowering plants

L Zhang, F Chen, X Zhang, Z Li, Y Zhao, R Lohaus… - Nature, 2020 - nature.com
Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and
Austrobaileyales together form the so-called ANA-grade of angiosperms, which are extant …

A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis

W Huang, L Zhang, JT Columbus, Y Hu, Y Zhao… - Molecular Plant, 2022 - cell.com
Poaceae (the grasses) includes rice, maize, wheat, and other crops, and is the most
economically important angiosperm family. Poaceae is also one of the largest plant families …

Pan-genome analysis of 13 Malus accessions reveals structural and sequence variations associated with fruit traits

T Wang, S Duan, C Xu, Y Wang, X Zhang, X Xu… - Nature …, 2023 - nature.com
Structural variations (SVs) and copy number variations (CNVs) contribute to trait variations in
fleshy-fruited species. Here, we assemble 10 genomes of genetically diverse Malus …

Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae

DN Wanasinghe, C Phukhamsakda, KD Hyde… - Fungal diversity, 2018 - Springer
This paper is the seventh in the Fungal Diversity Notes series, where 131 taxa
accommodated in 28 families are mainly described from Rosa (Rosaceae) and a few other …

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

L Hibrand Saint-Oyant, T Ruttink, L Hamama, I Kirov… - Nature plants, 2018 - nature.com
Rose is the world's most important ornamental plant, with economic, cultural and symbolic
value. Roses are cultivated worldwide and sold as garden roses, cut flowers and potted …

Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.)

Q Qiao, PP Edger, L Xue, L Qiong, J Lu… - Proceedings of the …, 2021 - pnas.org
Strawberry (Fragaria spp.) has emerged as a model system for various fundamental and
applied research in recent years. In total, the genomes of five different species have been …