Long non-coding RNAs in myeloid malignancies

AA Zimta, C Tomuleasa, I Sahnoune, GA Calin… - Frontiers in …, 2019 - frontiersin.org
Acute myeloid leukemia (AML) represents 80% of adult leukemias and 15–20% of childhood
leukemias. AML are characterized by the presence of 20% blasts or more in the bone …

Navigating the multiverse of antisense RNAs: The transcription-and RNA-dependent dimension

G Pagani, C Pandini, P Gandellini - Non-coding RNA, 2022 - mdpi.com
Evidence accumulated over the past decades shows that the number of identified antisense
transcripts is continuously increasing, promoting them from transcriptional noise to real …

Transcription elongation is finely tuned by dozens of regulatory factors

M Couvillion, KM Harlen, KC Lachance, KL Trotta… - Elife, 2022 - elifesciences.org
Understanding the complex network that regulates transcription elongation requires the
quantitative analysis of RNA polymerase II (Pol II) activity in a wide variety of regulatory …

Paf1 has distinct roles in transcription elongation and differential transcript fate

H Fischl, FS Howe, A Furger, J Mellor - Molecular cell, 2017 - cell.com
RNA polymerase II (Pol2) movement through chromatin and the co-transcriptional
processing and fate of nascent transcripts is coordinated by transcription elongation factors …

Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis

V Bidnenko, P Nicolas, A Grylak-Mielnicka… - PLoS …, 2017 - journals.plos.org
In eukaryotes, RNA species originating from pervasive transcription are regulators of various
cellular processes, from the expression of individual genes to the control of cellular …

Antisense transcription represses Arabidopsis seed dormancy QTL DOG1 to regulate drought tolerance

R Yatusevich, H Fedak, A Ciesielski, K Krzyczmonik… - EMBO …, 2017 - embopress.org
Plants have developed multiple strategies to sense the external environment and to adapt
growth accordingly. Delay of germination 1 (DOG 1) is a major quantitative trait locus (QTL) …

Antisense transcription‐dependent chromatin signature modulates sense transcript dynamics

T Brown, FS Howe, SC Murray, M Wouters… - Molecular systems …, 2018 - embopress.org
Antisense transcription is widespread in genomes. Despite large differences in gene size
and architecture, we find that yeast and human genes share a unique, antisense …

Continuous transcription initiation guarantees robust repair of all transcribed genes and regulatory regions

A Liakos, D Konstantopoulos, MD Lavigne… - Nature …, 2020 - nature.com
Inhibition of transcription caused by DNA damage-impaired RNA polymerase II (Pol II)
elongation conceals a local increase in de novo transcription, slowly progressing from …

Size fractionated NET‐Seq reveals a conserved architecture of transcription units around yeast genes

S **, T Nguyen, S Murray, P Lorenz, J Mellor - Yeast, 2024 - Wiley Online Library
Genomes from yeast to humans are subject to pervasive transcription. A single round of
pervasive transcription is sufficient to alter local chromatin conformation, nucleosome …

RNA-mediated disease mechanisms in neurodegenerative disorders

A Neueder - Journal of molecular biology, 2019 - Elsevier
RNA is accurately entangled in virtually all pathways that maintain cellular homeostasis. To
name but a few, RNA is the “messenger” between DNA encoded information and the …